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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178073 (27 seq.)
>C025752
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
1082583
1082510
-
Ala
GGC
[Ensembl]
¡û
>WENV183709788
PDWI01034160
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3621
3546
-
Ala
GGC
[ENA]
¢þ
>WENV183720960
PDWJ01050690
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
605
530
-
Ala
GGC
[ENA]
¢þ
>C191179251
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
1084410
1084334
-
Ala
GGC
-
¡û
>C151004500
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
1083774
1083698
-
Ala
GGC
[Ensembl]
¡û
>C10113601
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
1083852
1083776
-
Ala
GGC
[Ensembl]
¡û
>C10113645
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
1084029
1083953
-
Ala
GGC
[Ensembl]
¡û
>C11122911
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
1077906
1077830
-
Ala
GGC
[Ensembl]
¡û
>C121002419
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
1084279
1084203
-
Ala
GGC
[Ensembl]
¡û
>C121002464
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
1084693
1084617
-
Ala
GGC
[Ensembl]
¡û
>C121002509
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
1084366
1084290
-
Ala
GGC
[Ensembl]
¡û
>C121006114
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
1084542
1084466
-
Ala
GGC
[Ensembl]
¡û
>C161017272
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
1082226
1082150
-
Ala
GGC
[Ensembl]
¡û
>C161028037
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
1084037
1083961
-
Ala
GGC
-
¡û
>C161028081
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
1084293
1084217
-
Ala
GGC
-
¡û
>C161028125
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
1083043
1082967
-
Ala
GGC
-
¡û
>C161028169
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
1084212
1084136
-
Ala
GGC
-
¡û
>C161028213
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
1084165
1084089
-
Ala
GGC
-
¡û
>C161028257
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
1084400
1084324
-
Ala
GGC
-
¡û
>C161028302
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
1084631
1084555
-
Ala
GGC
-
¡û
>C161028346
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
1084437
1084361
-
Ala
GGC
-
¡û
>C161028390
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
1084345
1084269
-
Ala
GGC
-
¡û
>C161084203
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
947768
947692
-
Ala
GGC
-
¡û
>C131001876
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
1084609
1084533
-
Ala
GGC
[Ensembl]
¡û
>C131009507
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
1085430
1085354
-
Ala
GGC
[Ensembl]
¡û
>C131011368
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
1084204
1084128
-
Ala
GGC
-
¡û
>C131011412
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
1084140
1084064
-
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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