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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178138 (13 seq.)
>WENV180022334
FTFY01001006
[FTFY] metagenome; soil
15817
15741
-
Arg
TCT
[ENA]
¢þ
>W1911572378
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4858136
4858212
+
Arg
TCT
[ENA]
¡û
>C151062593
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2324523
2324599
+
Arg
TCT
[Ensembl]
¡û
>C11105093
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
2962798
2962722
-
Arg
TCT
[Ensembl]
¡û
>C161053614
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3437477
3437401
-
Arg
TCT
[Ensembl]
¡û
>C161053636
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
1887576
1887652
+
Arg
TCT
-
¡û
>C161053708
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3335335
3335259
-
Arg
TCT
[Ensembl]
¡û
>C161053732
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1887855
1887931
+
Arg
TCT
[Ensembl]
¡û
>C161053782
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2245425
2245501
+
Arg
TCT
[Ensembl]
¡û
>W1710530347
FNOR01000001
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
252971
253047
+
Arg
TCT
[ENA]
¡û
>W1710556438
FOKF01000002
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
279851
279927
+
Arg
TCT
[ENA]
¡û
>W1710557522
FOLC01000003
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
203656
203580
-
Arg
TCT
[ENA]
¡û
>W1710564206
FOQI01000001
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
556715
556639
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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