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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178139 (41 seq.)
>W1710860664
LMDB01000012
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
1007988
1008064
+
Pro
GGG
[ENA]
¡û
>W1710861058
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
755462
755386
-
Pro
GGG
[ENA]
¡û
>W1710864555
LMFZ01000001
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
582328
582252
-
Pro
GGG
[ENA]
¡û
>W1710867205
LMIC01000001
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
392911
392987
+
Pro
GGG
[ENA]
¡û
>W1711033316
LRHV01000002
Betaproteobacteria
Duganella sp. HH105 [LRHV]
293102
293026
-
Pro
GGG
[ENA]
¡û
>W1711046661
LRON01000004
Betaproteobacteria
Duganella sp. HH101 [LRON]
57817
57893
+
Pro
GGG
[ENA]
¡û
>C171083840
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
746538
746462
-
Pro
GGG
-
¡û
>W131050135
AMWD01000002
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
2474338
2474262
-
Pro
GGG
[ENA]
¡û
>W131160029
AQWD01000213
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001004-K23 [AQWD]
37321
37245
-
Pro
GGG
[ENA]
¡û
>W131179063
ARMC01000005
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
57974
58050
+
Pro
GGG
[ENA]
¡û
>W131225156
AUDI01000014
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
270111
270187
+
Pro
GGG
[ENA]
¡û
>WENV180016368
FSUS01000497
[FSUS] metagenome; soil
7857
7781
-
Pro
GGG
[ENA]
¢þ
>WENV180018497
FSZM01000098
[FSZM] metagenome; soil
155
79
-
Pro
GGG
[ENA]
¢þ
>WENV180019281
FTBT01000001
[FTBT] metagenome; soil
271
195
-
Pro
GGG
[ENA]
¢þ
>WENV180025518
FTIP01030289
[FTIP] metagenome; soil
809
885
+
Pro
GGG
[ENA]
¢þ
>WENV180263740
OBEQ011502062
[OBEQ] groundwater metagenome; groundwater
3573
3497
-
Pro
GGG
[ENA]
¢þ
>WENV181167742
OEIU01067170
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
803
727
-
Pro
GGG
[ENA]
¢þ
>WENV183696793
OUMC01000008
[OUMC] metagenome; soil
8097
8173
+
Pro
GGG
[ENA]
¢þ
>WENV170004023
AGTN01537801
[AGTN] bioreactor metagenome; poplar biomass
16
92
+
Pro
GGG
[ENA]
¢þ
>W1911572402
PDBX01000002
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
135945
136021
+
Pro
GGG
[ENA]
¡û
>W1810486640
QAXZ01000014
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
31655
31731
+
Pro
GGG
[ENA]
¡û
>W1810487146
QAYI01000013
Betaproteobacteria
Massilia sp. GV016 [QAYI]
3930
3854
-
Pro
GGG
[ENA]
¡û
>W1810672633
QJTN01000013
Betaproteobacteria
Massilia sp. GV024 [QJTN]
3930
3854
-
Pro
GGG
[ENA]
¡û
>W1810908138
QVIL01000012
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
1157
1081
-
Pro
GGG
[ENA]
¡û
>W1810908205
QVIM01000013
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
231492
231568
+
Pro
GGG
[ENA]
¡û
>W1810908272
QVIN01000011
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
231491
231567
+
Pro
GGG
[ENA]
¡û
>W1810908328
QVIO01000003
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
1139
1063
-
Pro
GGG
[ENA]
¡û
>W1810908391
QVIP01000003
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
1108
1032
-
Pro
GGG
[ENA]
¡û
>C151062600
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
3255665
3255741
+
Pro
GGG
[Ensembl]
¡û
>C151092619
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
6271287
6271363
+
Pro
GGG
-
¡û
>C161053643
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
2716367
2716443
+
Pro
GGG
-
¡û
>C161053739
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
2704635
2704711
+
Pro
GGG
[Ensembl]
¡û
>W1610723010
LMDB01000012
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
1007988
1008064
+
Pro
GGG
[ENA]
¡û
>W1610723404
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
755462
755386
-
Pro
GGG
[ENA]
¡û
>W1610726901
LMFZ01000001
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
582328
582252
-
Pro
GGG
[ENA]
¡û
>W1610729551
LMIC01000001
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
392911
392987
+
Pro
GGG
[ENA]
¡û
>W1710530376
FNOR01000019
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
14092
14016
-
Pro
GGG
[ENA]
¡û
>W1710561526
FOOF01000010
Betaproteobacteria
Duganella sp. CF458 [FOOF]
26362
26286
-
Pro
GGG
[ENA]
¡û
>W1710564232
FOQI01000014
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
134094
134170
+
Pro
GGG
[ENA]
¡û
>W1710578391
FPBO01000009
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
179100
179176
+
Pro
GGG
[ENA]
¡û
>W1710585976
FQWU01000001
Betaproteobacteria
Massilia sp. CF038 [FQWU]
916703
916779
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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