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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178164 (11 seq.)
>W1711357150
MDHA01000069
Alphaproteobacteria
Thioclava sp. SK-1 [MDHA]
50532
50609
+
Pro
GGG
[ENA]
¡û
>W1810504530
QBKZ01000016
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
505391
505314
-
Pro
GGG
[ENA]
¡û
>W2010570078
JAATVU010000027
Alphaproteobacteria
Mangrovicoccus sp. HB161399 [JAATVU]
45256
45333
+
Pro
GGG
[ENA]
¡û
>W2011541917
SDAL01000001
Alphaproteobacteria
Rhodobacteraceae bacterium GH2-2 [SDAL]
241067
240990
-
Pro
GGG
[ENA]
¡û
>W2011962184
VATA01000004
Alphaproteobacteria
Poseidonocella sp. HB161398 [VATA]
278456
278533
+
Pro
GGG
[ENA]
¡û
>W2110240538
JACNMU010000002
Alphaproteobacteria
Fluviibacterium sp. MJW13 [JACNMU]
490992
490915
-
Pro
GGG
[ENA]
¡û
>W2110277204
JACVXA010000006
Alphaproteobacteria
Mangrovicoccus sp. HB182678 [JACVXA]
26067
26144
+
Pro
GGG
[ENA]
¡û
>W1610626496
LICH01000128
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
920
997
+
Pro
GGG
[ENA]
¡û
>W1610626690
LICP01000195
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
1176
1099
-
Pro
GGG
[ENA]
¡û
>W1710757623
LICH01000128
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
920
997
+
Pro
GGG
[ENA]
¡û
>W1710757817
LICP01000195
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
1176
1099
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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