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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17822 (76 seq.)
>W1711293902
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
89634
89724
+
Ser
TGA
[ENA]
¡û
>W1711293973
LZZA01000063
Bacillota
Clostridium saccharobutylicum [LZZA]
5150
5240
+
Ser
TGA
[ENA]
¡û
>W1711293975
LZZA01000063
Bacillota
Clostridium saccharobutylicum [LZZA]
5886
5976
+
Ser
TGA
[ENA]
¡û
>W1711294074
LZZC01000043
Bacillota
Clostridium beijerinckii [LZZC]
3020
3110
+
Ser
TGA
[ENA]
¡û
>W1711294076
LZZC01000043
Bacillota
Clostridium beijerinckii [LZZC]
3474
3564
+
Ser
TGA
[ENA]
¡û
>W1711294275
LZZG01000122
Bacillota
Clostridium beijerinckii [LZZG]
175
85
-
Ser
TGA
[ENA]
¡û
>W1711294349
LZZI01000238
Bacillota
Clostridium beijerinckii [LZZI]
3043
3133
+
Ser
TGA
[ENA]
¡û
>W1711294481
LZZK01000078
Bacillota
Clostridium beijerinckii [LZZK]
3383
3473
+
Ser
TGA
[ENA]
¡û
>W1711294483
LZZK01000078
Bacillota
Clostridium beijerinckii [LZZK]
3839
3929
+
Ser
TGA
[ENA]
¡û
>W1711294560
LZZM01000231
Bacillota
Clostridium puniceum [LZZM]
163
253
+
Ser
TGA
[ENA]
¡û
>W1711294562
LZZM01000231
Bacillota
Clostridium puniceum [LZZM]
770
860
+
Ser
TGA
[ENA]
¡û
>W1712096559
NHZR01000014
Bacillota
Clostridium diolis [NHZR]
123092
123002
-
Ser
TGA
[ENA]
¡û
>W1712096561
NHZR01000014
Bacillota
Clostridium diolis [NHZR]
122637
122547
-
Ser
TGA
[ENA]
¡û
>C171019428
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
29241
29331
+
Ser
TGA
-
¡û
>C171019507
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
29241
29331
+
Ser
TGA
-
¡û
>C171045554
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
19442
19532
+
Ser
TGA
-
¡û
>C171045556
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
20178
20268
+
Ser
TGA
-
¡û
>C171045705
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
19442
19532
+
Ser
TGA
-
¡û
>C171045707
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
20178
20268
+
Ser
TGA
-
¡û
>C171045797
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
17394
17484
+
Ser
TGA
-
¡û
>C171045799
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
17850
17940
+
Ser
TGA
-
¡û
>C171045874
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
19443
19533
+
Ser
TGA
-
¡û
>C171045876
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
20179
20269
+
Ser
TGA
-
¡û
>W131156896
AQQG01000144
Bacillota
Clostridium diolis DSM 15410 [AQQG]
87776
87686
-
Ser
TGA
[ENA]
¡û
>W131156898
AQQG01000144
Bacillota
Clostridium diolis DSM 15410 [AQQG]
87322
87232
-
Ser
TGA
[ENA]
¡û
>W131082847
ANZB01000017
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
64042
64132
+
Ser
TGA
[ENA]
¡û
>W131082852
ANZB01000017
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
79086
79176
+
Ser
TGA
[ENA]
¡û
>C005033
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
17570
17660
+
Ser
TGA
[Ensembl]
¡û
>C005035
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
18025
18115
+
Ser
TGA
[Ensembl]
¡û
>w011462
AALO01000014
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
119270
119178
-
Ser
TGA
[ENA]
¡û
>w011460
AALO01000014
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
119725
119633
-
Ser
TGA
[ENA]
¡û
>WENV180232549
OBCO01000808
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
2940
3030
+
Ser
TGA
[ENA]
¢þ
>WENV180232693
OBCO01009047
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV180233520
OBCP01000776
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
2940
3030
+
Ser
TGA
[ENA]
¢þ
>WENV180233657
OBCP01007494
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV180569806
OCLR01000491
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
28853
28763
-
Ser
TGA
[ENA]
¢þ
>WENV180569808
OCLR01000491
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
28398
28308
-
Ser
TGA
[ENA]
¢þ
>WENV180570898
OCLS01001012
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
2940
3030
+
Ser
TGA
[ENA]
¢þ
>WENV180571069
OCLS01003412
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV180571518
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
2940
3030
+
Ser
TGA
[ENA]
¢þ
>WENV180571520
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
3395
3485
+
Ser
TGA
[ENA]
¢þ
>WENV180574144
OCLW01000794
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
2940
3030
+
Ser
TGA
[ENA]
¢þ
>WENV180574280
OCLW01012450
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
93
3
-
Ser
TGA
[ENA]
¢þ
>WENV180639821
OCRL01000153
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
124619
124529
-
Ser
TGA
[ENA]
¢þ
>WENV180639823
OCRL01000153
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
124164
124074
-
Ser
TGA
[ENA]
¢þ
>WENV180640749
OCRM01000155
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
2940
3030
+
Ser
TGA
[ENA]
¢þ
>WENV180640751
OCRM01000155
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
3395
3485
+
Ser
TGA
[ENA]
¢þ
>W141083133
AUPH01001603
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
3342
3432
+
Ser
TGA
[ENA]
¡û
>W141200322
AYXR01000086
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
10186
10096
-
Ser
TGA
[ENA]
¡û
>W141200324
AYXR01000086
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
9731
9641
-
Ser
TGA
[ENA]
¡û
>WENV170700000
LIDZ01000162
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
984
894
-
Ser
TGA
[ENA]
¢þ
>C181203599
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
17535
17625
+
Ser
TGA
-
¡û
>C181203601
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
17991
18081
+
Ser
TGA
-
¡û
>W141702339
JMLK01000031
Bacillota
Clostridium akagii DSM 12554 [JMLK]
13603
13513
-
Ser
TGA
[ENA]
¡û
>W141803823
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
31118
31028
-
Ser
TGA
[ENA]
¡û
>C141007566
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
19442
19532
+
Ser
TGA
[Ensembl]
¡û
>C141007568
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
20178
20268
+
Ser
TGA
[Ensembl]
¡û
>W1810147477
PIQP01000011
Bacillota
Clostridium beijerinckii WB [PIQP]
124200
124110
-
Ser
TGA
[ENA]
¡û
>W1810147479
PIQP01000011
Bacillota
Clostridium beijerinckii WB [PIQP]
123746
123656
-
Ser
TGA
[ENA]
¡û
>W1810250465
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
123144
123054
-
Ser
TGA
[ENA]
¡û
>W1810250467
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
122688
122598
-
Ser
TGA
[ENA]
¡û
>W1810250469
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
122244
122154
-
Ser
TGA
[ENA]
¡û
>W1810271492
PRKY01000079
Bacillota
Clostridium diolis WST [PRKY]
12734
12644
-
Ser
TGA
[ENA]
¡û
>C151047004
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
29241
29331
+
Ser
TGA
[Ensembl]
¡û
>C151047083
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
29241
29331
+
Ser
TGA
[Ensembl]
¡û
>C151088312
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6169494
6169404
-
Ser
TGA
-
¡û
>C151088314
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6169039
6168949
-
Ser
TGA
-
¡û
>W11176258
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
268972
269062
+
Ser
TGA
[ENA]
¡û
>W11176260
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
269404
269494
+
Ser
TGA
[ENA]
¡û
>W121124024
BAEV01000082
Bacillota
Clostridium arbusti SL206 [BAEV]
12807
12897
+
Ser
TGA
[ENA]
¡û
>W121102356
AKWA01000055
Bacillota
Clostridium beijerinckii G117 [AKWA]
124200
124110
-
Ser
TGA
[ENA]
¡û
>W121102358
AKWA01000055
Bacillota
Clostridium beijerinckii G117 [AKWA]
123746
123656
-
Ser
TGA
[ENA]
¡û
>W1610030608
AYXL01000137
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
4923
5013
+
Ser
TGA
[ENA]
¡û
>C131002488
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
30677
30767
+
Ser
TGA
[Ensembl]
¡û
>W1710027731
AYXL01000137
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
4923
5013
+
Ser
TGA
[ENA]
¡û
>W1710605752
FWXH01000017
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
50134
50044
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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