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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178229 (106 seq.)
>W1710836653
LLKZ01000028
Gammaproteobacteria
Pseudomonas paraeruginosa aeruginosa [LLKZ]
37480
37404
-
Met
CAT
[ENA]
¡û
>W1710836673
LLKZ01000068
Gammaproteobacteria
Pseudomonas paraeruginosa aeruginosa [LLKZ]
57652
57728
+
Met
CAT
[ENA]
¡û
>W1710843738
LLPV01000005
Gammaproteobacteria
Pseudomonas aeruginosa [LLPV]
160918
160842
-
Met
CAT
[ENA]
¡û
>W1710844923
LLQP01000149
Gammaproteobacteria
Pseudomonas aeruginosa [LLQP]
187697
187621
-
Met
CAT
[ENA]
¡û
>W1710845632
LLRC01000003
Gammaproteobacteria
Pseudomonas aeruginosa [LLRC]
16718
16794
+
Met
CAT
[ENA]
¡û
>W1710846224
LLRM01000093
Gammaproteobacteria
Pseudomonas aeruginosa [LLRM]
17659
17735
+
Met
CAT
[ENA]
¡û
>W1711507853
MKXZ01000101
Gammaproteobacteria
Pseudomonas aeruginosa [MKXZ]
16577
16653
+
Met
CAT
[ENA]
¡û
>W1712102598
NINT01000116
Gammaproteobacteria
Pseudomonas aeruginosa [NINT]
5816
5740
-
Met
CAT
[ENA]
¡û
>WENV180226342
OBBQ01000025
[OBBQ] human gut metagenome; Infant 2 DOL 11 gut
196709
196633
-
Met
CAT
[ENA]
¢þ
>WENV180228577
OBCD01000271
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
6257
6181
-
Met
CAT
[ENA]
¢þ
>WENV180556016
OCJQ01000027
[OCJQ] human gut metagenome; Infant 2 DOL 15 gut
196709
196633
-
Met
CAT
[ENA]
¢þ
>WENV180556940
OCJU01000018
[OCJU] human gut metagenome; Infant 2 DOL 12 skin
196709
196633
-
Met
CAT
[ENA]
¢þ
>WENV180623613
OCQF01000028
[OCQF] human gut metagenome; Infant 2 DOL 14 gut
196709
196633
-
Met
CAT
[ENA]
¢þ
>WENV180635031
OCRC01000022
[OCRC] human oral metagenome; Infant 2 DOL 14 oral
196709
196633
-
Met
CAT
[ENA]
¢þ
>W141159337
AXOS01000011
Gammaproteobacteria
Pseudomonas aeruginosa C41 [AXOS]
2053478
2053554
+
Met
CAT
[ENA]
¡û
>W141160443
AXPK01000001
Gammaproteobacteria
Pseudomonas aeruginosa BL16 [AXPK]
40404
40328
-
Met
CAT
[ENA]
¡û
>W141160480
AXPK01000017
Gammaproteobacteria
Pseudomonas aeruginosa BL16 [AXPK]
52383
52459
+
Met
CAT
[ENA]
¡û
>W141161504
AXQB01000001
Gammaproteobacteria
Pseudomonas aeruginosa BWHPSA027 [AXQB]
136475
136399
-
Met
CAT
[ENA]
¡û
>WENV181811894
OGTA01000029
[OGTA] human gut metagenome; fecal sample 6 from infant 3
52277
52353
+
Met
CAT
[ENA]
¢þ
>WENV181811947
OGTA01000124
[OGTA] human gut metagenome; fecal sample 6 from infant 3
86
10
-
Met
CAT
[ENA]
¢þ
>W141221970
AZZJ01000002
Gammaproteobacteria
Pseudomonas aeruginosa BWHPSA044 [AZZJ]
148009
147933
-
Met
CAT
[ENA]
¡û
>WENV182410046
OIFK01000014
[OIFK] human gut metagenome; stool
58992
59068
+
Met
CAT
[ENA]
¢þ
>WENV182412325
OIFT01000012
[OIFT] human gut metagenome; stool
197665
197589
-
Met
CAT
[ENA]
¢þ
>WENV182961271
OKWK01000634
[OKWK] human gut metagenome; stool
9980
9904
-
Met
CAT
[ENA]
¢þ
>WENV170687776
LFRM01210794
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3459
3535
+
Met
CAT
[ENA]
¢þ
>WENV170721245
LSQX01183206
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
99210
99134
-
Met
CAT
[ENA]
¢þ
>W141569721
JIDZ01000051
Gammaproteobacteria
Pseudomonas aeruginosa BWH035 [JIDZ]
12077
12001
-
Met
CAT
[ENA]
¡û
>W1910291340
FRJG01000069
Gammaproteobacteria
Pseudomonas aeruginosa [FRJG]
16594
16670
+
Met
CAT
[ENA]
¡û
>W1910291440
FRJI01000121
Gammaproteobacteria
Pseudomonas aeruginosa [FRJI]
16598
16674
+
Met
CAT
[ENA]
¡û
>W1910291509
FRJJ01000167
Gammaproteobacteria
Pseudomonas aeruginosa [FRJJ]
16602
16678
+
Met
CAT
[ENA]
¡û
>W1910291608
FRJL01000123
Gammaproteobacteria
Pseudomonas aeruginosa [FRJL]
16598
16674
+
Met
CAT
[ENA]
¡û
>W1910291685
FRJM01000088
Gammaproteobacteria
Pseudomonas aeruginosa [FRJM]
16592
16668
+
Met
CAT
[ENA]
¡û
>W1910291732
FRJN01000079
Gammaproteobacteria
Pseudomonas aeruginosa [FRJN]
16600
16676
+
Met
CAT
[ENA]
¡û
>W1910291785
FRJO01000061
Gammaproteobacteria
Pseudomonas aeruginosa [FRJO]
16598
16674
+
Met
CAT
[ENA]
¡û
>W1910291820
FRJP01000142
Gammaproteobacteria
Pseudomonas aeruginosa [FRJP]
16602
16678
+
Met
CAT
[ENA]
¡û
>W1910291900
FRJQ01000159
Gammaproteobacteria
Pseudomonas aeruginosa [FRJQ]
1842
1766
-
Met
CAT
[ENA]
¡û
>W1910291910
FRJR01000007
Gammaproteobacteria
Pseudomonas aeruginosa [FRJR]
16592
16668
+
Met
CAT
[ENA]
¡û
>W1910291965
FRJS01000011
Gammaproteobacteria
Pseudomonas aeruginosa [FRJS]
16598
16674
+
Met
CAT
[ENA]
¡û
>W1910292045
FRJT01000068
Gammaproteobacteria
Pseudomonas aeruginosa [FRJT]
16596
16672
+
Met
CAT
[ENA]
¡û
>W1910292084
FRJU01000104
Gammaproteobacteria
Pseudomonas aeruginosa [FRJU]
1842
1766
-
Met
CAT
[ENA]
¡û
>W1910292302
FRJY01000007
Gammaproteobacteria
Pseudomonas aeruginosa [FRJY]
16596
16672
+
Met
CAT
[ENA]
¡û
>W1910292381
FRJZ01000073
Gammaproteobacteria
Pseudomonas aeruginosa [FRJZ]
1842
1766
-
Met
CAT
[ENA]
¡û
>W1910292425
FRKA01000059
Gammaproteobacteria
Pseudomonas aeruginosa [FRKA]
16592
16668
+
Met
CAT
[ENA]
¡û
>W1910292680
FRKF01000053
Gammaproteobacteria
Pseudomonas aeruginosa [FRKF]
16596
16672
+
Met
CAT
[ENA]
¡û
>W1910292740
FRKG01000041
Gammaproteobacteria
Pseudomonas aeruginosa [FRKG]
16592
16668
+
Met
CAT
[ENA]
¡û
>W1910292964
FRKK01000088
Gammaproteobacteria
Pseudomonas aeruginosa [FRKK]
16602
16678
+
Met
CAT
[ENA]
¡û
>W1910293103
FRKN01000041
Gammaproteobacteria
Pseudomonas aeruginosa [FRKN]
16596
16672
+
Met
CAT
[ENA]
¡û
>W1910293210
FRKP01000028
Gammaproteobacteria
Pseudomonas aeruginosa [FRKP]
16602
16678
+
Met
CAT
[ENA]
¡û
>W1910293297
FRKQ01000132
Gammaproteobacteria
Pseudomonas aeruginosa [FRKQ]
16590
16666
+
Met
CAT
[ENA]
¡û
>W1910301750
FRQM01000020
Gammaproteobacteria
Pseudomonas aeruginosa [FRQM]
52247
52323
+
Met
CAT
[ENA]
¡û
>W1910301794
FRQM01000115
Gammaproteobacteria
Pseudomonas aeruginosa [FRQM]
16532
16608
+
Met
CAT
[ENA]
¡û
>W1910305909
FRTJ01000050
Gammaproteobacteria
Pseudomonas aeruginosa [FRTJ]
52243
52319
+
Met
CAT
[ENA]
¡û
>W1910305950
FRTJ01000262
Gammaproteobacteria
Pseudomonas aeruginosa [FRTJ]
3172
3096
-
Met
CAT
[ENA]
¡û
>W1910306114
FRTM01000258
Gammaproteobacteria
Pseudomonas aeruginosa [FRTM]
16529
16605
+
Met
CAT
[ENA]
¡û
>W1910306116
FRTM01000264
Gammaproteobacteria
Pseudomonas aeruginosa [FRTM]
52243
52319
+
Met
CAT
[ENA]
¡û
>W1910306188
FRTO01000068
Gammaproteobacteria
Pseudomonas aeruginosa [FRTO]
52243
52319
+
Met
CAT
[ENA]
¡û
>W1910306224
FRTO01000389
Gammaproteobacteria
Pseudomonas aeruginosa [FRTO]
3172
3096
-
Met
CAT
[ENA]
¡û
>W1910307862
FRUS01000094
Gammaproteobacteria
Pseudomonas aeruginosa [FRUS]
16590
16666
+
Met
CAT
[ENA]
¡û
>W1910307940
FRUT01000119
Gammaproteobacteria
Pseudomonas aeruginosa [FRUT]
16592
16668
+
Met
CAT
[ENA]
¡û
>W1910307976
FRUU01000034
Gammaproteobacteria
Pseudomonas aeruginosa [FRUU]
16596
16672
+
Met
CAT
[ENA]
¡û
>W1911193563
NQYZ01000052
Gammaproteobacteria
Pseudomonas aeruginosa W1j [NQYZ]
52834
52910
+
Met
CAT
[ENA]
¡û
>W1911193907
NQZF01000017
Gammaproteobacteria
Pseudomonas aeruginosa U1o-2 [NQZF]
52320
52396
+
Met
CAT
[ENA]
¡û
>W1911193993
NQZH01000004
Gammaproteobacteria
Pseudomonas aeruginosa U1i [NQZH]
256465
256541
+
Met
CAT
[ENA]
¡û
>W1911201796
NRFQ01000022
Gammaproteobacteria
Pseudomonas aeruginosa env408 [NRFQ]
16606
16682
+
Met
CAT
[ENA]
¡û
>W1911202535
NRGD01000011
Gammaproteobacteria
Pseudomonas aeruginosa env187 [NRGD]
104520
104444
-
Met
CAT
[ENA]
¡û
>W1911258416
NSTB01000013
Gammaproteobacteria
Pseudomonas aeruginosa W5Aug16 [NSTB]
52584
52660
+
Met
CAT
[ENA]
¡û
>W1911258427
NSTB01000035
Gammaproteobacteria
Pseudomonas aeruginosa W5Aug16 [NSTB]
18732
18808
+
Met
CAT
[ENA]
¡û
>W1911261856
NSVK01000021
Gammaproteobacteria
Pseudomonas aeruginosa AMT0071-76 [NSVK]
18732
18808
+
Met
CAT
[ENA]
¡û
>W1911270080
NTBB01000018
Gammaproteobacteria
Pseudomonas aeruginosa PA-W7 [NTBB]
28477
28553
+
Met
CAT
[ENA]
¡û
>W1911826512
QZYF01000034
Gammaproteobacteria
Pseudomonas aeruginosa HUM-301 [QZYF]
17962
18038
+
Met
CAT
[ENA]
¡û
>W1911826535
QZYF01000101
Gammaproteobacteria
Pseudomonas aeruginosa HUM-301 [QZYF]
4963
4887
-
Met
CAT
[ENA]
¡û
>W1911826545
QZYG01000021
Gammaproteobacteria
Pseudomonas aeruginosa HUM-247 [QZYG]
5176
5100
-
Met
CAT
[ENA]
¡û
>W1911826552
QZYG01000037
Gammaproteobacteria
Pseudomonas aeruginosa HUM-247 [QZYG]
52446
52522
+
Met
CAT
[ENA]
¡û
>W1911826599
QZYH01000002
Gammaproteobacteria
Pseudomonas aeruginosa HUM-246 [QZYH]
104414
104338
-
Met
CAT
[ENA]
¡û
>W1911826676
QZYI01000057
Gammaproteobacteria
Pseudomonas aeruginosa HUM-260 [QZYI]
197665
197589
-
Met
CAT
[ENA]
¡û
>W1911826909
QZYM01000094
Gammaproteobacteria
Pseudomonas aeruginosa ENV-209 [QZYM]
16159
16235
+
Met
CAT
[ENA]
¡û
>W1911826939
QZYM01000308
Gammaproteobacteria
Pseudomonas aeruginosa ENV-209 [QZYM]
16556
16632
+
Met
CAT
[ENA]
¡û
>W1911826969
QZYN01000140
Gammaproteobacteria
Pseudomonas aeruginosa HUM-322-D2 [QZYN]
19940
19864
-
Met
CAT
[ENA]
¡û
>W1911826993
QZYN01000284
Gammaproteobacteria
Pseudomonas aeruginosa HUM-322-D2 [QZYN]
3199
3123
-
Met
CAT
[ENA]
¡û
>W1911827047
QZYO01000109
Gammaproteobacteria
Pseudomonas aeruginosa HUM-322-D1 [QZYO]
52195
52119
-
Met
CAT
[ENA]
¡û
>W1911827068
QZYO01000211
Gammaproteobacteria
Pseudomonas aeruginosa HUM-322-D1 [QZYO]
3199
3123
-
Met
CAT
[ENA]
¡û
>W1810899436
QVAU01000012
Gammaproteobacteria
Pseudomonas aeruginosa PABL103 [QVAU]
57217
57293
+
Met
CAT
[ENA]
¡û
>W1810899962
QVBD01000092
Gammaproteobacteria
Pseudomonas aeruginosa PABL093 [QVBD]
16534
16610
+
Met
CAT
[ENA]
¡û
>W1810901167
QVBZ01000026
Gammaproteobacteria
Pseudomonas aeruginosa PABL070 [QVBZ]
18318
18242
-
Met
CAT
[ENA]
¡û
>W1810901425
QVCE01000016
Gammaproteobacteria
Pseudomonas aeruginosa PABL065 [QVCE]
18997
18921
-
Met
CAT
[ENA]
¡û
>W1810902704
QVDB01000015
Gammaproteobacteria
Pseudomonas aeruginosa PABL041 [QVDB]
16534
16610
+
Met
CAT
[ENA]
¡û
>W1511406847
JTNW01000021
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15024 [JTNW]
52651
52727
+
Met
CAT
[ENA]
¡û
>W1511406863
JTNW01000042
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15024 [JTNW]
59079
59155
+
Met
CAT
[ENA]
¡û
>W1511407549
JTOJ01000011
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15011 [JTOJ]
197608
197532
-
Met
CAT
[ENA]
¡û
>W1511407582
JTOJ01000063
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15011 [JTOJ]
3265
3189
-
Met
CAT
[ENA]
¡û
>W1511416174
JTUL01000031
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE14850 [JTUL]
16499
16575
+
Met
CAT
[ENA]
¡û
>W1511420153
JTXG01000106
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE14699 [JTXG]
11917
11841
-
Met
CAT
[ENA]
¡û
>W1511450881
JVCP01000057
Gammaproteobacteria
Pseudomonas aeruginosa 549_PAER [JVCP]
18746
18822
+
Met
CAT
[ENA]
¡û
>C161018980
CP008860
Gammaproteobacteria
Pseudomonas aeruginosa H27930 [CP008860]
2221732
2221656
-
Met
CAT
-
¡û
>C161019073
CP008862
Gammaproteobacteria
Pseudomonas aeruginosa M1608 [CP008862]
3346702
3346778
+
Met
CAT
-
¡û
>C161019152
CP008863
Gammaproteobacteria
Pseudomonas aeruginosa M37351 [CP008863]
4604191
4604115
-
Met
CAT
-
¡û
>C161019206
CP008864
Gammaproteobacteria
Pseudomonas aeruginosa W60856 [CP008864]
4503199
4503275
+
Met
CAT
-
¡û
>C161019222
CP008864
Gammaproteobacteria
Pseudomonas aeruginosa W60856 [CP008864]
6598993
6598917
-
Met
CAT
-
¡û
>W1610605463
LFRZ01000067
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
3459
3535
+
Met
CAT
[ENA]
¡û
>W1610699792
LLKZ01000028
Gammaproteobacteria
Pseudomonas paraeruginosa aeruginosa [LLKZ]
37480
37404
-
Met
CAT
[ENA]
¡û
>W1610699812
LLKZ01000068
Gammaproteobacteria
Pseudomonas paraeruginosa aeruginosa [LLKZ]
57652
57728
+
Met
CAT
[ENA]
¡û
>W1610706877
LLPV01000005
Gammaproteobacteria
Pseudomonas aeruginosa [LLPV]
160918
160842
-
Met
CAT
[ENA]
¡û
>W1610708062
LLQP01000149
Gammaproteobacteria
Pseudomonas aeruginosa [LLQP]
187697
187621
-
Met
CAT
[ENA]
¡û
>W1610708771
LLRC01000003
Gammaproteobacteria
Pseudomonas aeruginosa [LLRC]
16718
16794
+
Met
CAT
[ENA]
¡û
>W1610709363
LLRM01000093
Gammaproteobacteria
Pseudomonas aeruginosa [LLRM]
17659
17735
+
Met
CAT
[ENA]
¡û
>W1710726750
LFRZ01000067
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
3459
3535
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK