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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178276 (57 seq.)
>W1710860223
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
557116
557042
-
Met
CAT
[ENA]
¡û
>W1710863972
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
619139
619065
-
Met
CAT
[ENA]
¡û
>W1710864517
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2348101
2348175
+
Met
CAT
[ENA]
¡û
>W1710868842
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
682947
683021
+
Met
CAT
[ENA]
¡û
>W1710875107
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
862078
862152
+
Met
CAT
[ENA]
¡û
>W1710875933
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
583687
583613
-
Met
CAT
[ENA]
¡û
>W1710876027
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
367351
367425
+
Met
CAT
[ENA]
¡û
>W1710947766
LOSO01000011
Actinomycetota
Microbacterium sp. CH1 [LOSO]
569147
569073
-
Met
CAT
[ENA]
¡û
>W131036138
AKVP01000017
Actinomycetota
Microbacterium barkeri 2011-R4 [AKVP]
56055
56129
+
Met
CAT
[ENA]
¡û
>W131098960
AOSO01000004
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
562796
562722
-
Met
CAT
[ENA]
¡û
>W1711173337
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
36779
36855
+
Met
CAT
[ENA]
¡û
>W131226591
AUEM01000002
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
545403
545329
-
Met
CAT
[ENA]
¡û
>C171073912
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
1735232
1735306
+
Met
CAT
-
¡û
>W141075429
ATAO01000206
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
186147
186221
+
Met
CAT
[ENA]
¡û
>WENV181385507
OFRI01105374
[OFRI] wastewater metagenome; Exp Tend VB 90WW
434
509
+
Ile2
CAT
[ENA]
¢þ
>W141289401
JARC01000025
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
298559
298633
+
Met
CAT
[ENA]
¡û
>W141289446
JARD01000012
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
186975
186901
-
Met
CAT
[ENA]
¡û
>W141289490
JARE01000047
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
275574
275648
+
Met
CAT
[ENA]
¡û
>W141289554
JARF01000036
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
204222
204148
-
Met
CAT
[ENA]
¡û
>C181004099
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
1907072
1906998
-
Met
CAT
-
¡û
>C181200425
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
1717142
1717216
+
Met
CAT
-
¡û
>C191026864
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
1804090
1804164
+
Met
CAT
-
¡û
>C191074623
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
1967410
1967336
-
Met
CAT
-
¡û
>W1910183337
BJNQ01000003
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
179080
179154
+
Met
CAT
[ENA]
¡û
>W1910211988
FMIR01000019
Actinomycetota
Microbacterium oxydans [FMIR]
118085
118159
+
Met
CAT
[ENA]
¡û
>W1910636837
LPVV01000040
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
240246
240321
+
Met
CAT
[ENA]
¡û
>W1911566438
PCOV01000001
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
642596
642671
+
Met
CAT
[ENA]
¡û
>W1911566685
PCPA01000001
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
343577
343651
+
Met
CAT
[ENA]
¡û
>W1911566833
PCPD01000004
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
88764
88838
+
Met
CAT
[ENA]
¡û
>W1911566985
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
666656
666730
+
Met
CAT
[ENA]
¡û
>W1911567102
PCPI01000001
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
195153
195079
-
Met
CAT
[ENA]
¡û
>W1911567149
PCPJ01000001
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
525673
525599
-
Met
CAT
[ENA]
¡û
>W1911567235
PCPL01000001
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
195158
195084
-
Met
CAT
[ENA]
¡û
>W1911567509
PCPQ01000001
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
195150
195076
-
Met
CAT
[ENA]
¡û
>W1911594724
PNFU01000004
Actinomycetota
Microbacterium sp. UMB0228 [PNFU]
124355
124429
+
Met
CAT
[ENA]
¡û
>W1810538497
QDFV01000003
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
260280
260205
-
Met
CAT
[ENA]
¡û
>C151093237
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
762297
762371
+
Met
CAT
-
¡û
>W1510085892
CDWI01000011
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
951141
951217
+
Met
CAT
[ENA]
¡û
>W1511348016
JRKC01000005
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
180263
180189
-
Met
CAT
[ENA]
¡û
>W1511509256
JXQX01000002
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
110600
110526
-
Met
CAT
[ENA]
¡û
>W1511510210
JXRU01000021
Actinomycetota
Microbacterium sp. SA39 [JXRU]
12252
12328
+
Met
CAT
[ENA]
¡û
>W1511528736
JYIU01000046
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
202701
202627
-
Met
CAT
[ENA]
¡û
>C161061344
CP013859
Actinomycetota
Microbacterium sp. XT11 [CP013859]
2547847
2547923
+
Met
CAT
[Ensembl]
¡û
>W1610068279
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
239256
239330
+
Met
CAT
[ENA]
¡û
>W1610081043
BDCY01000002
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
1309780
1309854
+
Met
CAT
[ENA]
¡û
>W1610722569
LMCS01000001
Actinomycetota
Microbacterium sp. Root322 [LMCS]
557116
557042
-
Met
CAT
[ENA]
¡û
>W1610726318
LMFN01000002
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
619139
619065
-
Met
CAT
[ENA]
¡û
>W1610726863
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2348101
2348175
+
Met
CAT
[ENA]
¡û
>W1610731188
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
682947
683021
+
Met
CAT
[ENA]
¡û
>W1610737453
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
862078
862152
+
Met
CAT
[ENA]
¡û
>W1610738279
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
583687
583613
-
Met
CAT
[ENA]
¡û
>W1610738373
LMOW01000002
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
367351
367425
+
Met
CAT
[ENA]
¡û
>W1610803768
LOSO01000011
Actinomycetota
Microbacterium sp. CH1 [LOSO]
569147
569073
-
Met
CAT
[ENA]
¡û
>W1610981942
LWCU01000012
Actinomycetota
Microbacterium sp. H83 [LWCU]
36779
36855
+
Met
CAT
[ENA]
¡û
>W1710065652
BCRF01000001
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
239256
239330
+
Met
CAT
[ENA]
¡û
>W1710079694
BDCY01000002
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
1309780
1309854
+
Met
CAT
[ENA]
¡û
>W1710535597
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
2089169
2089095
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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