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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178337 (88 seq.)
>W1710868113
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2085590
2085514
-
His
GTG
[ENA]
¡û
>W1710870146
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
693927
693851
-
His
GTG
[ENA]
¡û
>W1710870382
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
80461
80537
+
His
GTG
[ENA]
¡û
>W1710870458
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
325419
325343
-
His
GTG
[ENA]
¡û
>W1710870720
LMKT01000001
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
407234
407310
+
His
GTG
[ENA]
¡û
>W1710870864
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
356235
356311
+
His
GTG
[ENA]
¡û
>W1710870950
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
229265
229341
+
His
GTG
[ENA]
¡û
>W1710871055
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
874347
874423
+
His
GTG
[ENA]
¡û
>W1710871182
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
360739
360663
-
His
GTG
[ENA]
¡û
>W1710871231
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1466873
1466949
+
His
GTG
[ENA]
¡û
>W1710872281
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
664063
664139
+
His
GTG
[ENA]
¡û
>W1710876485
LMPG01000014
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
170379
170303
-
His
GTG
[ENA]
¡û
>W1710876762
LMPM01000003
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
164887
164811
-
His
GTG
[ENA]
¡û
>W1710877196
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
626014
626090
+
His
GTG
[ENA]
¡û
>W1710878044
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
1324248
1324172
-
His
GTG
[ENA]
¡û
>W1710879463
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
855522
855598
+
His
GTG
[ENA]
¡û
>W1710894015
LNFI01000001
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
53667
53591
-
His
GTG
[ENA]
¡û
>C171030405
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
3716810
3716734
-
His
GTG
-
¡û
>C171095046
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
323826
323902
+
His
GTG
-
¡û
>WENV180016146
FSUD01000646
[FSUD] metagenome; soil
6332
6408
+
His
GTG
[ENA]
¢þ
>WENV180019242
FTBP01000085
[FTBP] metagenome; soil
2021
2097
+
His
GTG
[ENA]
¢þ
>WENV180020220
FTCZ01000071
[FTCZ] metagenome; soil
79
3
-
His
GTG
[ENA]
¢þ
>WENV180026970
FTIV01016954
[FTIV] metagenome; soil
108
32
-
His
GTG
[ENA]
¢þ
>WENV180105020
OAPD01001710
[OAPD] marine metagenome; 2010
1616
1540
-
His
GTG
[ENA]
¢þ
>WENV180108008
OAPH01029587
[OAPH] marine metagenome; seawater
392
316
-
His
GTG
[ENA]
¢þ
>WENV180292580
OBIV01519375
[OBIV] soil metagenome; Clay
89
165
+
His
GTG
[ENA]
¢þ
>WENV181374620
OFQY01012528
[OFQY] wastewater metagenome; Exp Tend VB 10WW
1230
1154
-
His
GTG
[ENA]
¢þ
>WENV181378207
OFRA01099167
[OFRA] wastewater metagenome; Lake Maggiore Verbania
345
421
+
His
GTG
[ENA]
¢þ
>WENV181379294
OFRD01000335
[OFRD] wastewater metagenome; Exp Tend CN 100WW
12019
11943
-
His
GTG
[ENA]
¢þ
>WENV181386128
OFRL01000779
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
6229
6153
-
His
GTG
[ENA]
¢þ
>WENV170121428
CENM01009755
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
375
299
-
His
GTG
[ENA]
¢þ
>WENV170565008
CZQE01000396
[CZQE] hydrothermal vent metagenome; ocean water
4076
4152
+
His
GTG
[ENA]
¢þ
>WENV170574303
FLYM01024550
[FLYM] hot springs metagenome; Sediment
853
777
-
His
GTG
[ENA]
¢þ
>WENV170709889
LNFM01000858
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18314
18390
+
His
GTG
[ENA]
¢þ
>C181108615
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
283626
283702
+
His
GTG
-
¡û
>C191154781
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
1583444
1583368
-
His
GTG
-
¡û
>C191163762
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
3272204
3272128
-
His
GTG
-
¡û
>W141801045
JPDP01000692
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
200
276
+
His
GTG
[ENA]
¡û
>W1810463424
PZZN01000002
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
845884
845960
+
His
GTG
[ENA]
¡û
>W1810475061
QAIS01000458
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
1800
1876
+
His
GTG
[ENA]
¡û
>W1810476696
QAOF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
843398
843474
+
His
GTG
[ENA]
¡û
>W1810476752
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
538876
538952
+
His
GTG
[ENA]
¡û
>W1810486900
QAYE01000007
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
202658
202582
-
His
GTG
[ENA]
¡û
>SRA1014312
SRR023845.85094
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
91
-
His
GTG
[SRA]
>SRA1014547
SRR023845.193412
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
28
-
His
GTG
[SRA]
>SRA1014635
SRR023845.235315
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
144
220
+
His
GTG
[SRA]
>SRA1014684
SRR023845.262927
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
144
220
+
His
GTG
[SRA]
>SRA1015041
SRR023845.433197
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
200
276
+
His
GTG
[SRA]
>SRA1015082
SRR023845.453781
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
239
+
His
GTG
[SRA]
>SRA1015139
SRR023845.475151
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
162
238
+
His
GTG
[SRA]
>SRA1015544
SRR023846.105128
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
85
9
-
His
GTG
[SRA]
>SRA1015715
SRR023846.168087
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
90
-
His
GTG
[SRA]
>SRA1015928
SRR023846.267067
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
261
185
-
His
GTG
[SRA]
>SRA1015953
SRR023846.281476
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
90
-
His
GTG
[SRA]
>SRA1016157
SRR023846.372779
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
183
107
-
His
GTG
[SRA]
>SRA1016476
SRR023846.519260
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
143
219
+
His
GTG
[SRA]
>C151054371
CP009571
Alphaproteobacteria
Sphingomonas taxi ATCC 55669 [CP009571]
886776
886700
-
His
GTG
[Ensembl]
¡û
>C151073217
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
2645044
2644968
-
His
GTG
[Ensembl]
¡û
>W1511357081
JRVI01000282
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
1835
1911
+
His
GTG
[ENA]
¡û
>W1511361511
JSBN01000119
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
6525
6601
+
His
GTG
[ENA]
¡û
>W1511390143
JSXI01000025
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
10423
10499
+
His
GTG
[ENA]
¡û
>W121031782
AHHA01000037
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
111940
111864
-
His
GTG
[ENA]
¡û
>W121033222
AHIR01000006
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
387484
387408
-
His
GTG
[ENA]
¡û
>W121033292
AHIS01000095
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
171296
171220
-
His
GTG
[ENA]
¡û
>W121046821
AIDW01000020
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
55854
55778
-
His
GTG
[ENA]
¡û
>W1610076497
BCYU01000002
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
78720
78796
+
His
GTG
[ENA]
¡û
>W1610076639
BCYX01000002
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
172509
172433
-
His
GTG
[ENA]
¡û
>W1610730459
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2085590
2085514
-
His
GTG
[ENA]
¡û
>W1610732492
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
693927
693851
-
His
GTG
[ENA]
¡û
>W1610732728
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
80461
80537
+
His
GTG
[ENA]
¡û
>W1610732804
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
325419
325343
-
His
GTG
[ENA]
¡û
>W1610733066
LMKT01000001
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
407234
407310
+
His
GTG
[ENA]
¡û
>W1610733210
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
356235
356311
+
His
GTG
[ENA]
¡û
>W1610733296
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
229265
229341
+
His
GTG
[ENA]
¡û
>W1610733401
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
874347
874423
+
His
GTG
[ENA]
¡û
>W1610733528
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
360739
360663
-
His
GTG
[ENA]
¡û
>W1610733577
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1466873
1466949
+
His
GTG
[ENA]
¡û
>W1610734627
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
664063
664139
+
His
GTG
[ENA]
¡û
>W1610738831
LMPG01000014
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
170379
170303
-
His
GTG
[ENA]
¡û
>W1610739108
LMPM01000003
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
164887
164811
-
His
GTG
[ENA]
¡û
>W1610739542
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
626014
626090
+
His
GTG
[ENA]
¡û
>W1610740390
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
1324248
1324172
-
His
GTG
[ENA]
¡û
>W1610741809
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
855522
855598
+
His
GTG
[ENA]
¡û
>W1610754281
LNFI01000001
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
53667
53591
-
His
GTG
[ENA]
¡û
>W1710074186
BCYU01000002
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
78720
78796
+
His
GTG
[ENA]
¡û
>W1710074328
BCYX01000002
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
172509
172433
-
His
GTG
[ENA]
¡û
>W1710509115
FMWX01000004
Alphaproteobacteria
Sphingomonas sp. NFR15 [FMWX]
90026
89950
-
His
GTG
[ENA]
¡û
>W1710571499
FOVZ01000001
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
504791
504867
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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