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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178374 (92 seq.)
>W1710786424
LJIX01000006
Bacillota
Cytobacillus solani FJAT-18043 [LJIX]
1638006
1637930
-
Arg
CCT
[ENA]
¡û
>W1710859017
LMBV01000010
Bacillota
Peribacillus muralis [LMBV]
17042
17118
+
Arg
CCT
[ENA]
¡û
>W1710859037
LMBW01000008
Bacillota
Fredinandcohnia humi [LMBW]
118755
118831
+
Arg
CCT
[ENA]
¡û
>W1710859113
LMBX01000018
Bacillota
Cytobacillus praedii FJAT-25547 [LMBX]
20873
20797
-
Arg
CCT
[ENA]
¡û
>W1710859170
LMBY01000006
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
45050
45127
+
Arg
CCT
[ENA]
¡û
>W1710878996
LMRJ01000039
Bacillota
Bacillus sp. Leaf13 [LMRJ]
17510
17586
+
Arg
CCT
[ENA]
¡û
>W1710881305
LMSZ01000031
Bacillota
Bacillus sp. Soil745 [LMSZ]
468677
468753
+
Arg
CCT
[ENA]
¡û
>W1710881339
LMTA01000013
Bacillota
Bacillus sp. Soil768D1 [LMTA]
344916
344992
+
Arg
CCT
[ENA]
¡û
>W1710882678
LMVB01000003
Bacillota
Paenibacillus sp. FJAT-29882 [LMVB]
7936
7860
-
Arg
CCT
[ENA]
¡û
>W1710885461
LMXG01000003
Bacillota
Bacillus sp. FJAT-28573 [LMXG]
7936
7860
-
Arg
CCT
[ENA]
¡û
>W1710905456
LNNH01000012
Bacillota
Peribacillus simplex [LNNH]
283306
283382
+
Arg
CCT
[ENA]
¡û
>W1711130033
LUUN01000003
Bacillota
Cytobacillus horneckiae [LUUN]
16400
16325
-
Arg
CCT
[ENA]
¡û
>W1711130091
LUUO01000001
Bacillota
Cytobacillus eiseniae [LUUO]
851223
851149
-
Arg
CCT
[ENA]
¡û
>W1711130216
LUUP01000006
Bacillota
Cytobacillus gottheilii [LUUP]
434038
434114
+
Arg
CCT
[ENA]
¡û
>W1711130495
LUUS01000001
Bacillota
Peribacillus frigoritolerans [LUUS]
352635
352559
-
Arg
CCT
[ENA]
¡û
>W1711182047
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
396586
396510
-
Arg
CCT
[ENA]
¡û
>W1711182208
LWJJ01000068
Bacillota
Peribacillus simplex [LWJJ]
204617
204541
-
Arg
CCT
[ENA]
¡û
>W1711305293
MAMP01000012
Bacillota
Domibacillus iocasae [MAMP]
351791
351715
-
Arg
CCT
[ENA]
¡û
>W1711538790
MLYQ01000027
Bacillota
Bacillus sp. MUM 13 [MLYQ]
33454
33378
-
Arg
CCT
[ENA]
¡û
>W1711680650
MRWQ01000006
Bacillota
Domibacillus mangrovi SAOS 44 [MRWQ]
192388
192312
-
Arg
CCT
[ENA]
¡û
>C171056629
CP017080
Bacillota
Peribacillus muralis G25-68 [CP017080]
4791456
4791532
+
Arg
CCT
-
¡û
>WENV180655381
OCVV010433052
[OCVV] gut metagenome; gut
189
265
+
Arg
CCT
[ENA]
¢þ
>WENV180655382
OCVV010433052
[OCVV] gut metagenome; gut
189
265
+
Arg
CCT
[ENA]
¢þ
>W141193405
AYSD01000014
Bacillota
Bacillus cihuensis FJAT-14515 [AYSD]
4522
4446
-
Arg
CCT
[ENA]
¡û
>W141239683
CAET01000038
Bacillota
Bacillus timonensis 10403023 [CAET]
73100
73176
+
Arg
CCT
[ENA]
¡û
>C181027480
CP017704
Bacillota
Peribacillus simplex NBRC 15720 = DSM 1321 [CP017704]
2689631
2689557
-
Arg
CCT
-
¡û
>C181074314
CP022983
Bacillota
Cytobacillus kochii BDGP4 [CP022983]
337926
338000
+
Arg
CCT
-
¡û
>C181194375
CP030926
Bacillota
Peribacillus butanolivorans PHB-7a [CP030926]
2336210
2336284
+
Arg
CCT
-
¡û
>C191040344
CP026095
Bacillota
Peribacillus asahii OM18 [CP026095]
4690621
4690695
+
Arg
CCT
-
¡û
>C191071778
CP030063
Bacillota
Peribacillus frigoritolerans ZB201705 [CP030063]
3418599
3418525
-
Arg
CCT
-
¡û
>W1910225539
FMSO01000026
Bacillota
Bacillus massiliglaciei Marseille-P2600 [FMSO]
91243
91169
-
Arg
CCT
[ENA]
¡û
>W1910340613
FTOX01000016
Bacillota
Bacillus sinesaloumensis Marseille-P3516 [FTOX]
438884
438958
+
Arg
CCT
[ENA]
¡û
>W1910399639
FUVC01000028
Bacillota
Cytobacillus gottheilii Marseille-P3555 [FUVC]
240603
240677
+
Arg
CCT
[ENA]
¡û
>W1910549382
FZPG01000002
Bacillota
Bacillus sp. OK838 [FZPG]
479811
479885
+
Arg
CCT
[ENA]
¡û
>W1910550970
FZRJ01000008
Bacillota
Cytobacillus massiliigabonensis Marseille-P2639 [FZRJ]
29956
30030
+
Arg
CCT
[ENA]
¡û
>W1910755536
MKYS01000005
Bacillota
Peribacillus simplex 313 [MKYS]
194389
194463
+
Arg
CCT
[ENA]
¡û
>W1910871093
NCWW01000010
Bacillota
Peribacillus simplex OG2 [NCWW]
28392
28466
+
Arg
CCT
[ENA]
¡û
>W1911177968
NQLS01000055
Bacillota
Peribacillus simplex 7894 [NQLS]
66342
66416
+
Arg
CCT
[ENA]
¡û
>W1911239781
NSEA01000012
Bacillota
Fredinandcohnia onubensis 10J4 [NSEA]
34815
34889
+
Arg
CCT
[ENA]
¡û
>W1911239834
NSEB01000004
Bacillota
Fredinandcohnia onubensis 0911MAR22V3 [NSEB]
371063
370989
-
Arg
CCT
[ENA]
¡û
>W1911298413
NTTZ01000005
Bacillota
Bacillus sp. AFS017274 [NTTZ]
91105
91179
+
Arg
CCT
[ENA]
¡û
>W1911311172
NUBA01000007
Bacillota
Bacillus sp. AFS026049 [NUBA]
91488
91562
+
Arg
CCT
[ENA]
¡û
>W1911317770
NUEQ01000034
Bacillota
Peribacillus butanolivorans AFS003229 [NUEQ]
116921
116847
-
Arg
CCT
[ENA]
¡û
>W1911343134
NUSS01000010
Bacillota
Bacillus sp. AFS043905 [NUSS]
91379
91453
+
Arg
CCT
[ENA]
¡û
>W1911381476
NVNR01000028
Bacillota
Bacillus sp. AFS094228 [NVNR]
112504
112430
-
Arg
CCT
[ENA]
¡û
>W1911405102
NWQJ01000005
Bacillota
Peribacillus simplex WY10 [NWQJ]
109890
109816
-
Arg
CCT
[ENA]
¡û
>W1911565839
PCOJ01000008
Bacillota
Peribacillus simplex MYb48 [PCOJ]
72039
72113
+
Arg
CCT
[ENA]
¡û
>W1911675742
QGHH01000004
Bacillota
Fredinandcohnia aciditolerans YN-1 [QGHH]
283967
284041
+
Arg
CCT
[ENA]
¡û
>W1911760469
QWVS01000012
Bacillota
Peribacillus asahii MA001 [QWVS]
74115
74189
+
Arg
CCT
[ENA]
¡û
>W1810103644
PGUW01000026
Bacillota
Bacillus sp. V5-8f [PGUW]
166649
166575
-
Arg
CCT
[ENA]
¡û
>W1810104284
PGVF01000014
Bacillota
Bacillus sp. M6-12 [PGVF]
21620
21544
-
Arg
CCT
[ENA]
¡û
>W1810115851
PHNG01000703
Bacillota
Bacillus sp. mrc49 [PHNG]
10155
10081
-
Arg
CCT
[ENA]
¡û
>W1810149081
PISD01000084
Bacillota
Cytobacillus horneckiae 1P01SC [PISD]
35800
35726
-
Arg
CCT
[ENA]
¡û
>W1810154757
PIZR01000003
Bacillota
Bacillus sp. BA3 [PIZR]
473338
473412
+
Arg
CCT
[ENA]
¡û
>W1810361146
PVQJ01000006
Bacillota
Bacillus sp. RJGP41 [PVQJ]
112020
111946
-
Arg
CCT
[ENA]
¡û
>W1810888174
QUQV01000009
Bacillota
Bacillus sp. HNG [QUQV]
461
387
-
Arg
CCT
[ENA]
¡û
>W1810915182
QVTC01000017
Bacillota
Bacillus sp. V59.32b V59.32a [QVTC]
18359
18285
-
Arg
CCT
[ENA]
¡û
>W1810915300
QVTD01000019
Bacillota
Peribacillus glennii V44-8 [QVTD]
1755
1681
-
Arg
CCT
[ENA]
¡û
>W1810915330
QVTE01000008
Bacillota
Peribacillus saganii V47-23a [QVTE]
178297
178223
-
Arg
CCT
[ENA]
¡û
>W1510061089
CCXW01000001
Bacillota
Peribacillus simplex P558 [CCXW]
142915
142839
-
Arg
CCT
[ENA]
¡û
>W1511455476
JVGU01000047
Bacillota
Bacillus sp. 445_BSPC [JVGU]
1093
1017
-
Arg
CCT
[ENA]
¡û
>W1511464048
JVPL01000296
Bacillota
Bacillus sp. 220_BSPC [JVPL]
17588
17664
+
Arg
CCT
[ENA]
¡û
>W1511566524
LAHL01000007
Bacillota
Domibacillus robiginosus WS 4628 [LAHL]
30607
30683
+
Arg
CCT
[ENA]
¡û
>W1511568333
LAJA01000001
Bacillota
Domibacillus tundrae PAMC 80007 [LAJA]
651548
651623
+
Arg
CCT
[ENA]
¡û
>W1511568372
LAJA01000012
Bacillota
Domibacillus tundrae PAMC 80007 [LAJA]
21329
21255
-
Arg
CCT
[ENA]
¡û
>W1511693531
LFZW01000001
Bacillota
Peribacillus loiseleuriae FJAT-27997 [LFZW]
4979866
4979942
+
Arg
CCT
[ENA]
¡û
>C161031053
CP011008
Bacillota
Peribacillus simplex SH-B26 [CP011008]
5242780
5242856
+
Arg
CCT
[Ensembl]
¡û
>C161042882
CP012600
Bacillota
Bacillus gobiensis FJAT-4402 [CP012600]
3129016
3129093
+
Arg
CCT
[Ensembl]
¡û
>W1610029534
AXBR01000027
Bacillota
Peribacillus simplex BA2H3 [AXBR]
91765
91841
+
Arg
CCT
[ENA]
¡û
>W1610073002
BCVO01000014
Bacillota
Peribacillus simplex NBRC 15720 [BCVO]
91412
91488
+
Arg
CCT
[ENA]
¡û
>W1610586349
LDGI01000046
Bacillota
Peribacillus muralis G25-68 [LDGI]
126455
126379
-
Arg
CCT
[ENA]
¡û
>W1610650279
LJIX01000006
Bacillota
Cytobacillus solani FJAT-18043 [LJIX]
1638006
1637930
-
Arg
CCT
[ENA]
¡û
>W1610721363
LMBV01000010
Bacillota
Peribacillus muralis [LMBV]
17042
17118
+
Arg
CCT
[ENA]
¡û
>W1610721383
LMBW01000008
Bacillota
Fredinandcohnia humi [LMBW]
118755
118831
+
Arg
CCT
[ENA]
¡û
>W1610721459
LMBX01000018
Bacillota
Cytobacillus praedii FJAT-25547 [LMBX]
20873
20797
-
Arg
CCT
[ENA]
¡û
>W1610721516
LMBY01000006
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
45050
45127
+
Arg
CCT
[ENA]
¡û
>W1610741342
LMRJ01000039
Bacillota
Bacillus sp. Leaf13 [LMRJ]
17510
17586
+
Arg
CCT
[ENA]
¡û
>W1610743651
LMSZ01000031
Bacillota
Bacillus sp. Soil745 [LMSZ]
468677
468753
+
Arg
CCT
[ENA]
¡û
>W1610743685
LMTA01000013
Bacillota
Bacillus sp. Soil768D1 [LMTA]
344916
344992
+
Arg
CCT
[ENA]
¡û
>W1610744604
LMVB01000003
Bacillota
Paenibacillus sp. FJAT-29882 [LMVB]
7936
7860
-
Arg
CCT
[ENA]
¡û
>W1610747387
LMXG01000003
Bacillota
Bacillus sp. FJAT-28573 [LMXG]
7936
7860
-
Arg
CCT
[ENA]
¡û
>W1610764470
LNNH01000012
Bacillota
Peribacillus simplex [LNNH]
283306
283382
+
Arg
CCT
[ENA]
¡û
>W1610941106
LUUN01000003
Bacillota
Cytobacillus horneckiae [LUUN]
16400
16325
-
Arg
CCT
[ENA]
¡û
>W1610941164
LUUO01000001
Bacillota
Cytobacillus eiseniae [LUUO]
851223
851149
-
Arg
CCT
[ENA]
¡û
>W1610941289
LUUP01000006
Bacillota
Cytobacillus gottheilii [LUUP]
434038
434114
+
Arg
CCT
[ENA]
¡û
>W1610941568
LUUS01000001
Bacillota
Peribacillus frigoritolerans [LUUS]
352635
352559
-
Arg
CCT
[ENA]
¡û
>W1610989264
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
396586
396510
-
Arg
CCT
[ENA]
¡û
>W1610989425
LWJJ01000068
Bacillota
Peribacillus simplex [LWJJ]
204617
204541
-
Arg
CCT
[ENA]
¡û
>W1710026904
AXBR01000027
Bacillota
Peribacillus simplex BA2H3 [AXBR]
91765
91841
+
Arg
CCT
[ENA]
¡û
>W1710070120
BCVO01000014
Bacillota
Peribacillus simplex NBRC 15720 [BCVO]
91412
91488
+
Arg
CCT
[ENA]
¡û
>W1710558591
FOMA01000002
Bacillota
Bacillus sp. OV322 [FOMA]
173063
172987
-
Arg
CCT
[ENA]
¡û
>W1710597005
FTMX01000003
Bacillota
Peribacillus simplex [FTMX]
473753
473829
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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