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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178379 (133 seq.)
>W1710862656
LMEO01000008
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
141188
141112
-
Asp
GTC
[ENA]
¡û
>W1710862681
LMEO01000031
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
322
398
+
Asp
GTC
[ENA]
¡û
>W1710862708
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
441
365
-
Asp
GTC
[ENA]
¡û
>W1710862719
LMEO01000052
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
312183
312107
-
Asp
GTC
[ENA]
¡û
>W1710862735
LMEO01000053
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
209576
209500
-
Asp
GTC
[ENA]
¡û
>W1710879649
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
120228
120152
-
Asp
GTC
[ENA]
¡û
>W1710879667
LMRV01000030
Bacillota
Paenibacillus sp. Soil522 [LMRV]
110460
110384
-
Asp
GTC
[ENA]
¡û
>W1710879703
LMRV01000065
Bacillota
Paenibacillus sp. Soil522 [LMRV]
28638
28562
-
Asp
GTC
[ENA]
¡û
>W1710879839
LMRY01000009
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
218333
218257
-
Asp
GTC
[ENA]
¡û
>W1710879860
LMRY01000023
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
316900
316824
-
Asp
GTC
[ENA]
¡û
>W1710879875
LMRY01000038
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
320
396
+
Asp
GTC
[ENA]
¡û
>W1710879892
LMRY01000057
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
496
420
-
Asp
GTC
[ENA]
¡û
>W1710879903
LMRY01000059
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
385756
385680
-
Asp
GTC
[ENA]
¡û
>W1710880110
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
273833
273757
-
Asp
GTC
[ENA]
¡û
>W1710880147
LMSD01000022
Bacillota
Paenibacillus sp. Soil750 [LMSD]
418
494
+
Asp
GTC
[ENA]
¡û
>W1710880166
LMSD01000029
Bacillota
Paenibacillus sp. Soil750 [LMSD]
22774
22698
-
Asp
GTC
[ENA]
¡û
>W1710880177
LMSD01000030
Bacillota
Paenibacillus sp. Soil750 [LMSD]
725
801
+
Asp
GTC
[ENA]
¡û
>W1710880444
LMSJ01000002
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
3710
3786
+
Asp
GTC
[ENA]
¡û
>W1710880468
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153450
153374
-
Asp
GTC
[ENA]
¡û
>W1710880504
LMSJ01000042
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
23898
23822
-
Asp
GTC
[ENA]
¡û
>W1710880534
LMSJ01000060
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
243677
243601
-
Asp
GTC
[ENA]
¡û
>W1710880791
LMSP01000013
Bacillota
Paenibacillus sp. Soil787 [LMSP]
657
733
+
Asp
GTC
[ENA]
¡û
>W1710880807
LMSP01000028
Bacillota
Paenibacillus sp. Soil787 [LMSP]
904
980
+
Asp
GTC
[ENA]
¡û
>W1710880821
LMSP01000031
Bacillota
Paenibacillus sp. Soil787 [LMSP]
32735
32659
-
Asp
GTC
[ENA]
¡û
>W1710880845
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9635
9559
-
Asp
GTC
[ENA]
¡û
>W1710880857
LMSP01000040
Bacillota
Paenibacillus sp. Soil787 [LMSP]
673
749
+
Asp
GTC
[ENA]
¡û
>W1710988618
LPVJ01000020
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
4089
4013
-
Asp
GTC
[ENA]
¡û
>W1711252517
LYPB01000052
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
24213
24137
-
Asp
GTC
[ENA]
¡û
>W1711252527
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
551
627
+
Asp
GTC
[ENA]
¡û
>W1711252600
LYPC01000008
Bacillota
Paenibacillus pectinilyticus [LYPC]
767
843
+
Asp
GTC
[ENA]
¡û
>W1711252613
LYPC01000010
Bacillota
Paenibacillus pectinilyticus [LYPC]
284836
284760
-
Asp
GTC
[ENA]
¡û
>W1711252629
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
533
609
+
Asp
GTC
[ENA]
¡û
>W1711252643
LYPC01000016
Bacillota
Paenibacillus pectinilyticus [LYPC]
216488
216412
-
Asp
GTC
[ENA]
¡û
>W1711252651
LYPC01000017
Bacillota
Paenibacillus pectinilyticus [LYPC]
615
691
+
Asp
GTC
[ENA]
¡û
>W1711309566
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
199002
198926
-
Asp
GTC
[ENA]
¡û
>W1711309582
MAQX01000006
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
69151
69075
-
Asp
GTC
[ENA]
¡û
>W1711309620
MAQX01000035
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
319106
319030
-
Asp
GTC
[ENA]
¡û
>W1711338657
MBTG01000038
Bacillota
Paenibacillus ferrarius [MBTG]
211
287
+
Asp
GTC
[ENA]
¡û
>W1711338668
MBTG01000044
Bacillota
Paenibacillus ferrarius [MBTG]
195
271
+
Asp
GTC
[ENA]
¡û
>W131229626
AUGY01000091
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
600
676
+
Asp
GTC
[ENA]
¡û
>W131229650
AUGY01000146
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
9444
9368
-
Asp
GTC
[ENA]
¡û
>W131229663
AUGY01000147
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
852
776
-
Asp
GTC
[ENA]
¡û
>W131229673
AUGY01000165
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
8618
8542
-
Asp
GTC
[ENA]
¡û
>WENV181364757
OFPC01001111
[OFPC] sediment metagenome; Lake sediment
509
433
-
Asp
GTC
[ENA]
¢þ
>C181038573
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
3053364
3053288
-
Asp
GTC
-
¡û
>C181070219
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1290899
1290975
+
Asp
GTC
-
¡û
>C181070234
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1342793
1342869
+
Asp
GTC
-
¡û
>C181070241
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
1344362
1344438
+
Asp
GTC
-
¡û
>C181070269
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4429295
4429219
-
Asp
GTC
-
¡û
>C181070286
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4328463
4328387
-
Asp
GTC
-
¡û
>C181070297
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4318974
4318898
-
Asp
GTC
-
¡û
>C181070323
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3452045
3451969
-
Asp
GTC
-
¡û
>C181070345
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3148549
3148473
-
Asp
GTC
-
¡û
>C181070355
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
3147480
3147404
-
Asp
GTC
-
¡û
>C181070386
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2607772
2607696
-
Asp
GTC
-
¡û
>C191007131
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
6816975
6817051
+
Asp
GTC
-
¡û
>C191007161
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
4040269
4040193
-
Asp
GTC
-
¡û
>C191007656
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
586185
586261
+
Asp
GTC
-
¡û
>C191007689
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5173757
5173681
-
Asp
GTC
-
¡û
>C191007704
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5160682
5160606
-
Asp
GTC
-
¡û
>W141564698
JIAZ01000010
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
338885
338809
-
Asp
GTC
[ENA]
¡û
>W141564732
JIAZ01000036
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
45825
45749
-
Asp
GTC
[ENA]
¡û
>W141564749
JIAZ01000039
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
362
438
+
Asp
GTC
[ENA]
¡û
>W1910154516
BILU01000190
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
9099
9023
-
Asp
GTC
[ENA]
¡û
>W1910154527
BILU01000230
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
3499
3423
-
Asp
GTC
[ENA]
¡û
>C141001458
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
3076445
3076369
-
Asp
GTC
[Ensembl]
¡û
>W1910940475
NJAR01000002
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
94802
94878
+
Asp
GTC
[ENA]
¡û
>W1910940525
NJAR01000010
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
1867357
1867281
-
Asp
GTC
[ENA]
¡û
>W1910940557
NJAR01000011
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
304544
304468
-
Asp
GTC
[ENA]
¡û
>W1911075514
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
1156661
1156737
+
Asp
GTC
[ENA]
¡û
>SRA1005883
SRR014589.11546
Metagenomic analysis of viruses in reclaimed water (SRP000673)
127
51
-
Asp
GTC
[SRA]
>SRA1005885
SRR014589.12948
Metagenomic analysis of viruses in reclaimed water (SRP000673)
161
85
-
Asp
GTC
[SRA]
>SRA1005917
SRR014589.42473
Metagenomic analysis of viruses in reclaimed water (SRP000673)
123
199
+
Asp
GTC
[SRA]
>SRA1005931
SRR014589.58943
Metagenomic analysis of viruses in reclaimed water (SRP000673)
218
142
-
Asp
GTC
[SRA]
>SRA1006018
SRR014589.116901
Metagenomic analysis of viruses in reclaimed water (SRP000673)
184
108
-
Asp
GTC
[SRA]
>SRA1006045
SRR014589.145081
Metagenomic analysis of viruses in reclaimed water (SRP000673)
63
139
+
Asp
GTC
[SRA]
>SRA1006078
SRR014589.169626
Metagenomic analysis of viruses in reclaimed water (SRP000673)
38
113
+
Asp
GTC
[SRA]
>SRA1006089
SRR014589.177647
Metagenomic analysis of viruses in reclaimed water (SRP000673)
62
138
+
Asp
GTC
[SRA]
>SRA1006103
SRR014589.190690
Metagenomic analysis of viruses in reclaimed water (SRP000673)
102
178
+
Asp
GTC
[SRA]
>W1810671922
QJTA01000028
Bacillota
Paenibacillus sp. OV191 [QJTA]
55624
55548
-
Asp
GTC
[ENA]
¡û
>W1810671927
QJTA01000031
Bacillota
Paenibacillus sp. OV191 [QJTA]
521
597
+
Asp
GTC
[ENA]
¡û
>W1810759047
QPJD01000007
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
376075
375999
-
Asp
GTC
[ENA]
¡û
>W1810787740
QRDY01000011
Bacillota
Cohnella lupini CECT 8236 [QRDY]
175440
175364
-
Asp
GTC
[ENA]
¡û
>W1810787756
QRDY01000018
Bacillota
Cohnella lupini CECT 8236 [QRDY]
107413
107337
-
Asp
GTC
[ENA]
¡û
>W1511433050
JUGY01000019
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
781
857
+
Asp
GTC
[ENA]
¡û
>W1511433060
JUGY01000021
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
835
911
+
Asp
GTC
[ENA]
¡û
>W1511433082
JUGY01000040
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
70764
70688
-
Asp
GTC
[ENA]
¡û
>W1511433099
JUGY01000078
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
728
804
+
Asp
GTC
[ENA]
¡û
>W1511433114
JUGY01000095
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
1197
1273
+
Asp
GTC
[ENA]
¡û
>W1511698223
LGHP01000001
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
3951540
3951616
+
Asp
GTC
[ENA]
¡û
>W1511698230
LGHP01000001
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
4879017
4879093
+
Asp
GTC
[ENA]
¡û
>W1511698269
LGHP01000003
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
1367
1443
+
Asp
GTC
[ENA]
¡û
>W1610725002
LMEO01000008
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
141188
141112
-
Asp
GTC
[ENA]
¡û
>W1610725027
LMEO01000031
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
322
398
+
Asp
GTC
[ENA]
¡û
>W1610725054
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
441
365
-
Asp
GTC
[ENA]
¡û
>W1610725065
LMEO01000052
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
312183
312107
-
Asp
GTC
[ENA]
¡û
>W1610725081
LMEO01000053
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
209576
209500
-
Asp
GTC
[ENA]
¡û
>W1610741995
LMRV01000028
Bacillota
Paenibacillus sp. Soil522 [LMRV]
120228
120152
-
Asp
GTC
[ENA]
¡û
>W1610742013
LMRV01000030
Bacillota
Paenibacillus sp. Soil522 [LMRV]
110460
110384
-
Asp
GTC
[ENA]
¡û
>W1610742049
LMRV01000065
Bacillota
Paenibacillus sp. Soil522 [LMRV]
28638
28562
-
Asp
GTC
[ENA]
¡û
>W1610742185
LMRY01000009
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
218333
218257
-
Asp
GTC
[ENA]
¡û
>W1610742206
LMRY01000023
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
316900
316824
-
Asp
GTC
[ENA]
¡û
>W1610742221
LMRY01000038
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
320
396
+
Asp
GTC
[ENA]
¡û
>W1610742238
LMRY01000057
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
496
420
-
Asp
GTC
[ENA]
¡û
>W1610742249
LMRY01000059
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
385756
385680
-
Asp
GTC
[ENA]
¡û
>W1610742456
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
273833
273757
-
Asp
GTC
[ENA]
¡û
>W1610742493
LMSD01000022
Bacillota
Paenibacillus sp. Soil750 [LMSD]
418
494
+
Asp
GTC
[ENA]
¡û
>W1610742512
LMSD01000029
Bacillota
Paenibacillus sp. Soil750 [LMSD]
22774
22698
-
Asp
GTC
[ENA]
¡û
>W1610742523
LMSD01000030
Bacillota
Paenibacillus sp. Soil750 [LMSD]
725
801
+
Asp
GTC
[ENA]
¡û
>W1610742790
LMSJ01000002
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
3710
3786
+
Asp
GTC
[ENA]
¡û
>W1610742814
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153450
153374
-
Asp
GTC
[ENA]
¡û
>W1610742850
LMSJ01000042
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
23898
23822
-
Asp
GTC
[ENA]
¡û
>W1610742880
LMSJ01000060
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
243677
243601
-
Asp
GTC
[ENA]
¡û
>W1610743137
LMSP01000013
Bacillota
Paenibacillus sp. Soil787 [LMSP]
657
733
+
Asp
GTC
[ENA]
¡û
>W1610743153
LMSP01000028
Bacillota
Paenibacillus sp. Soil787 [LMSP]
904
980
+
Asp
GTC
[ENA]
¡û
>W1610743167
LMSP01000031
Bacillota
Paenibacillus sp. Soil787 [LMSP]
32735
32659
-
Asp
GTC
[ENA]
¡û
>W1610743191
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9635
9559
-
Asp
GTC
[ENA]
¡û
>W1610743203
LMSP01000040
Bacillota
Paenibacillus sp. Soil787 [LMSP]
673
749
+
Asp
GTC
[ENA]
¡û
>W1610843494
LPVJ01000020
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
4089
4013
-
Asp
GTC
[ENA]
¡û
>W1611017305
LYPB01000052
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
24213
24137
-
Asp
GTC
[ENA]
¡û
>W1611017315
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
551
627
+
Asp
GTC
[ENA]
¡û
>W1611017388
LYPC01000008
Bacillota
Paenibacillus pectinilyticus [LYPC]
767
843
+
Asp
GTC
[ENA]
¡û
>W1611017401
LYPC01000010
Bacillota
Paenibacillus pectinilyticus [LYPC]
284836
284760
-
Asp
GTC
[ENA]
¡û
>W1611017417
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
533
609
+
Asp
GTC
[ENA]
¡û
>W1611017431
LYPC01000016
Bacillota
Paenibacillus pectinilyticus [LYPC]
216488
216412
-
Asp
GTC
[ENA]
¡û
>W1611017439
LYPC01000017
Bacillota
Paenibacillus pectinilyticus [LYPC]
615
691
+
Asp
GTC
[ENA]
¡û
>W1611057223
MAQX01000002
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
199002
198926
-
Asp
GTC
[ENA]
¡û
>W1611057239
MAQX01000006
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
69151
69075
-
Asp
GTC
[ENA]
¡û
>W1611057277
MAQX01000035
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
319106
319030
-
Asp
GTC
[ENA]
¡û
>W1710523726
FNIF01000020
Bacillota
Paenibacillus sp. yr247 [FNIF]
520
596
+
Asp
GTC
[ENA]
¡û
>W1710523736
FNIF01000023
Bacillota
Paenibacillus sp. yr247 [FNIF]
73302
73226
-
Asp
GTC
[ENA]
¡û
>W1710523764
FNIF01000026
Bacillota
Paenibacillus sp. yr247 [FNIF]
65606
65530
-
Asp
GTC
[ENA]
¡û
>W1710523788
FNIF01000043
Bacillota
Paenibacillus sp. yr247 [FNIF]
18906
18830
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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