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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178531 (12 seq.)
>WENV180362415
OBNW01156627
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
160
237
+
Val
CAC
[ENA]
¡û
>WENV182553148
OJCR01000128
[OJCR] seawater metagenome; Sea water
20783
20860
+
Val
CAC
[ENA]
¡û
>WENV182564858
OJEF01010769
[OJEF] seawater metagenome; Sea water
1524
1447
-
Val
CAC
[ENA]
¡û
>WENV182568074
OJEP01025238
[OJEP] seawater metagenome; Sea water
671
594
-
Val
CAC
[ENA]
¡û
>WENV182572350
OJFL01004159
[OJFL] seawater metagenome; Sea water
2479
2556
+
Val
CAC
[ENA]
¡û
>WENV182573408
OJFP01001441
[OJFP] seawater metagenome; Sea water
5054
4977
-
Val
CAC
[ENA]
¡û
>WENV182580346
OJGW01000053
[OJGW] seawater metagenome; Sea water
8496
8419
-
Val
CAC
[ENA]
¡û
>WENV182581652
OJGX01029576
[OJGX] seawater metagenome; Sea water
583
506
-
Val
CAC
[ENA]
¡û
>WENV182586431
OJHK01000346
[OJHK] seawater metagenome; Sea water
11699
11622
-
Val
CAC
[ENA]
¡û
>WENV183060824
OLHY01006767
[OLHY] seawater metagenome; Sea water
522
599
+
Val
CAC
[ENA]
¡û
>WENV170950296
MEHZ011489173
[MEHZ] marine metagenome; marine surface water
115956
116033
+
Val
CAC
[ENA]
¡û
>C231617073
CP119075
Verrucomicrobiota
Opitutaceae bacterium LMO-M01 [CP119075]
84269
84346
+
Val
CAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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