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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178547 (58 seq.)
>W1710943847
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
979182
979106
-
Arg
TCT
[ENA]
¡û
>W1711029712
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
979182
979106
-
Arg
TCT
[ENA]
¡û
>W1711065234
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
79972
80048
+
Arg
TCT
[ENA]
¡û
>W1711126120
LUNZ01000049
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
43082
43158
+
Arg
TCT
[ENA]
¡û
>W1711356901
MDGT01000003
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
916977
917053
+
Arg
TCT
[ENA]
¡û
>W1711437945
MIPW01000017
Gammaproteobacteria
Alteromonas macleodii [MIPW]
103834
103758
-
Arg
TCT
[ENA]
¡û
>W131230217
AUHL01000004
Gammaproteobacteria
Pseudidiomarina sediminum DSM 21906 [AUHL]
78185
78261
+
Arg
TCT
[ENA]
¡û
>W131045211
AMRG01000070
Gammaproteobacteria
Idiomarina xiamenensis 10-D-4 [AMRG]
54
130
+
Arg
TCT
[ENA]
¡û
>w012958
AAMX01000027
Gammaproteobacteria
Idiomarina baltica OS145 [AAMX]
21967
22045
+
Arg
TCT
[ENA]
¡û
>WENV170015982
AZIJ01006085
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
896
972
+
Arg
TCT
[ENA]
¢þ
>WENV170315223
CESO01086750
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
145
69
-
Arg
TCT
[ENA]
¢þ
>WENV170345384
CETF01000677
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1765
1689
-
Arg
TCT
[ENA]
¢þ
>WENV170655322
JTFN01021195
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1158
1082
-
Arg
TCT
[ENA]
¢þ
>WENV170656146
JTFO01000972
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1440
1516
+
Arg
TCT
[ENA]
¢þ
>WENV170744278
LULX01000096
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
43082
43158
+
Arg
TCT
[ENA]
¢þ
>C181059198
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1733529
1733453
-
Arg
TCT
-
¡û
>C181110276
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
246849
246773
-
Arg
TCT
-
¡û
>C181146692
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
844664
844740
+
Arg
TCT
-
¡û
>W141775915
JOKG01000001
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
1223034
1223110
+
Arg
TCT
[ENA]
¡û
>W1911584728
PIPJ01000003
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
63727
63803
+
Arg
TCT
[ENA]
¡û
>W1911585037
PIPP01000001
Gammaproteobacteria
Aliidiomarina shirensis AIS [PIPP]
818825
818749
-
Arg
TCT
[ENA]
¡û
>W1911585080
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
242377
242453
+
Arg
TCT
[ENA]
¡û
>W1911585192
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
447009
446933
-
Arg
TCT
[ENA]
¡û
>W1911585255
PIPT01000005
Gammaproteobacteria
Pseudidiomarina aquimaris SW15 [PIPT]
155181
155257
+
Arg
TCT
[ENA]
¡û
>W1911585280
PIPU01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis 908033 [PIPU]
637475
637551
+
Arg
TCT
[ENA]
¡û
>W1911585323
PIPV01000001
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
177423
177499
+
Arg
TCT
[ENA]
¡û
>W1911585449
PIPX01000001
Gammaproteobacteria
Pseudidiomarina homiensis PO-M2 [PIPX]
992306
992230
-
Arg
TCT
[ENA]
¡û
>W1911585480
PIPY01000005
Gammaproteobacteria
Pseudidiomarina insulisalsae CVS-6 [PIPY]
202689
202765
+
Arg
TCT
[ENA]
¡û
>W1911585544
PIPZ01000001
Gammaproteobacteria
Pseudidiomarina marina PIM1 [PIPZ]
982052
981976
-
Arg
TCT
[ENA]
¡û
>W1911585793
PIQE01000001
Gammaproteobacteria
Pseudidiomarina sediminum c121 [PIQE]
583624
583548
-
Arg
TCT
[ENA]
¡û
>W1911585821
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
293249
293325
+
Arg
TCT
[ENA]
¡û
>W1911585903
PIQG01000002
Gammaproteobacteria
Pseudidiomarina taiwanensis PIT1 [PIQG]
69243
69167
-
Arg
TCT
[ENA]
¡û
>W1911585928
PIQH01000004
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
13296
13372
+
Arg
TCT
[ENA]
¡û
>W1911585973
PIQJ01000001
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
777708
777784
+
Arg
TCT
[ENA]
¡û
>W1810609087
QGTT01000001
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
184179
184103
-
Arg
TCT
[ENA]
¡û
>W1810671364
QJST01000001
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
177558
177634
+
Arg
TCT
[ENA]
¡û
>W1810721832
QNSG01000001
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
130972
131048
+
Arg
TCT
[ENA]
¡û
>W1810758886
QPJA01000001
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
131000
131076
+
Arg
TCT
[ENA]
¡û
>W1510741073
CYHB01000001
Gammaproteobacteria
Pseudidiomarina woesei DSM 27808 [CYHB]
648449
648373
-
Arg
TCT
[ENA]
¡û
>W11170564
AFPO01000001
Gammaproteobacteria
Idiomarina sp. A28L [AFPO]
62983
63059
+
Arg
TCT
[ENA]
¡û
>C161054009
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
2406645
2406721
+
Arg
TCT
[Ensembl]
¡û
>C131008736
CP003873
Gammaproteobacteria
Alteromonas macleodii str. 'Balearic Sea AD45' [CP003873]
3097207
3097131
-
Arg
TCT
[Ensembl]
¡û
>C131014336
CP004851
Gammaproteobacteria
Alteromonas mediterranea U7 [CP004851]
3011228
3011152
-
Arg
TCT
[Ensembl]
¡û
>W1610616460
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
153740
153816
+
Arg
TCT
[ENA]
¡û
>W1610621737
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
218060
217984
-
Arg
TCT
[ENA]
¡û
>W1610632466
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
648449
648373
-
Arg
TCT
[ENA]
¡û
>W1610800147
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
979182
979106
-
Arg
TCT
[ENA]
¡û
>W1610877980
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
979182
979106
-
Arg
TCT
[ENA]
¡û
>W1610906023
LSBQ01000003
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
79972
80048
+
Arg
TCT
[ENA]
¡û
>W1610937053
LUNZ01000049
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
43082
43158
+
Arg
TCT
[ENA]
¡û
>W1710509882
FMXN01000011
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
67111
67035
-
Arg
TCT
[ENA]
¡û
>W1710515743
FNCB01000002
Gammaproteobacteria
Idiomarina zobellii [FNCB]
217933
217857
-
Arg
TCT
[ENA]
¡û
>W1710575011
FOYU01000001
Gammaproteobacteria
Pseudidiomarina maritima [FOYU]
965727
965651
-
Arg
TCT
[ENA]
¡û
>W1710577918
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
154431
154507
+
Arg
TCT
[ENA]
¡û
>W1710579245
FPCF01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis [FPCF]
636619
636695
+
Arg
TCT
[ENA]
¡û
>W1710741595
LGOW01000001
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
153740
153816
+
Arg
TCT
[ENA]
¡û
>W1710752610
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
218060
217984
-
Arg
TCT
[ENA]
¡û
>W1710766852
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
648449
648373
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK