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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178627 (126 seq.)
>W1710916313
LNVF01000011
Bacillota
Streptococcus oralis subsp. tigurinus [LNVF]
17449
17522
+
Arg
TCT
[ENA]
¡û
>W1710923580
LOBS01000010
Bacillota
Streptococcus gordonii [LOBS]
76432
76507
+
Arg
TCT
[ENA]
¡û
>W1711010204
LQRC01000219
Bacillota
Streptococcus gordonii [LQRC]
56148
56223
+
Arg
TCT
[ENA]
¡û
>W1711018264
LQWV01000012
Bacillota
Streptococcus gordonii [LQWV]
15223
15148
-
Arg
TCT
[ENA]
¡û
>W1711074083
LSJE01000120
Bacillota
Streptococcus sp. CCH8-G7 [LSJE]
2651
2576
-
Arg
TCT
[ENA]
¡û
>W1711095345
LTGS01000062
Bacillota
Streptococcus sp. HMSC062B01 [LTGS]
83912
83987
+
Arg
TCT
[ENA]
¡û
>W1711115101
LTZV01000056
Bacillota
Streptococcus sp. HMSC10A01 [LTZV]
174049
174124
+
Arg
TCT
[ENA]
¡û
>C171037399
CP015283
Bacillota
Streptococcus salivarius ATCC 25975 [CP015283]
539459
539534
+
Arg
TCT
-
¡û
>C171060355
CP017295
Bacillota
Streptococcus gordonii IE35 [CP017295]
171610
171535
-
Arg
TCT
-
¡û
>C171107861
CP020450
Bacillota
Streptococcus gordonii FDAARGOS_257 [CP020450]
788646
788721
+
Arg
TCT
-
¡û
>WENV180698662
ODDH01061957
[ODDH] human metagenome; G_DNA_Buccal mucosa
83
8
-
Arg
TCT
[ENA]
¢þ
>WENV180717779
ODGE01002089
[ODGE] human metagenome; G_DNA_Buccal mucosa
3415
3490
+
Arg
TCT
[ENA]
¢þ
>WENV180720121
ODGJ01017493
[ODGJ] human metagenome; G_DNA_Tongue dorsum
1539
1614
+
Arg
TCT
[ENA]
¢þ
>WENV180732256
ODGY01000047
[ODGY] human metagenome; G_DNA_Supragingival plaque
41232
41307
+
Arg
TCT
[ENA]
¢þ
>WENV180739444
ODHD01094946
[ODHD] human metagenome; G_DNA_Supragingival plaque
47
122
+
Arg
TCT
[ENA]
¢þ
>WENV180751526
ODHS01064165
[ODHS] human metagenome; G_DNA_Supragingival plaque
483
558
+
Arg
TCT
[ENA]
¢þ
>WENV180765308
ODIB01079474
[ODIB] human metagenome; G_DNA_Supragingival plaque
170
245
+
Arg
TCT
[ENA]
¢þ
>WENV180778117
ODIM01000650
[ODIM] human metagenome; G_DNA_Supragingival plaque
2675
2600
-
Arg
TCT
[ENA]
¢þ
>WENV180781451
ODIP01000111
[ODIP] human metagenome; G_DNA_Supragingival plaque
2680
2605
-
Arg
TCT
[ENA]
¢þ
>WENV180787235
ODIS01002458
[ODIS] human metagenome; G_DNA_Supragingival plaque
5422
5497
+
Arg
TCT
[ENA]
¢þ
>WENV180797951
ODJB01178875
[ODJB] human metagenome; G_DNA_Supragingival plaque
102
177
+
Arg
TCT
[ENA]
¢þ
>WENV180800734
ODJD01000665
[ODJD] human metagenome; G_DNA_Supragingival plaque
2660
2585
-
Arg
TCT
[ENA]
¢þ
>WENV180809359
ODJK01013888
[ODJK] human metagenome; G_DNA_Subgingival plaque
82
7
-
Arg
TCT
[ENA]
¢þ
>WENV180822263
ODJT01000166
[ODJT] human metagenome; G_DNA_Supragingival plaque
25328
25403
+
Arg
TCT
[ENA]
¢þ
>WENV180823050
ODJW01003261
[ODJW] human metagenome; G_DNA_Supragingival plaque
3284
3359
+
Arg
TCT
[ENA]
¢þ
>WENV180824128
ODJX01000918
[ODJX] human metagenome; G_DNA_Supragingival plaque
6841
6916
+
Arg
TCT
[ENA]
¢þ
>WENV180832535
ODKC01002154
[ODKC] human metagenome; G_DNA_Supragingival plaque
2753
2678
-
Arg
TCT
[ENA]
¢þ
>WENV180841645
ODKK01000792
[ODKK] human metagenome; G_DNA_Buccal mucosa
6365
6440
+
Arg
TCT
[ENA]
¢þ
>WENV180842404
ODKM01017060
[ODKM] human metagenome; G_DNA_Buccal mucosa
101
26
-
Arg
TCT
[ENA]
¢þ
>WENV180843886
ODKN01016080
[ODKN] human metagenome; G_DNA_Supragingival plaque
273
198
-
Arg
TCT
[ENA]
¢þ
>WENV180847411
ODKT01078981
[ODKT] human metagenome; G_DNA_Supragingival plaque
650
725
+
Arg
TCT
[ENA]
¢þ
>WENV180882106
ODMB01012467
[ODMB] human metagenome; G_DNA_Buccal mucosa
393
468
+
Arg
TCT
[ENA]
¢þ
>WENV180887558
ODMI01011712
[ODMI] human metagenome; G_DNA_Buccal mucosa
126
51
-
Arg
TCT
[ENA]
¢þ
>WENV180922740
ODTJ01009707
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2326
2401
+
Arg
TCT
[ENA]
¢þ
>WENV180923893
ODTK01000330
[ODTK] human metagenome; G_DNA_Supragingival plaque
31323
31398
+
Arg
TCT
[ENA]
¢þ
>WENV180928551
ODTM01082793
[ODTM] human metagenome; G_DNA_Supragingival plaque
345
270
-
Arg
TCT
[ENA]
¢þ
>WENV180933940
ODTR01006938
[ODTR] human metagenome; G_DNA_Supragingival plaque
434
359
-
Arg
TCT
[ENA]
¢þ
>WENV180936815
ODTV01000007
[ODTV] human metagenome; G_DNA_Buccal mucosa
2683
2608
-
Arg
TCT
[ENA]
¢þ
>WENV180945633
ODUC01289706
[ODUC] human metagenome; G_DNA_Supragingival plaque
21
96
+
Arg
TCT
[ENA]
¢þ
>WENV180951034
ODUH01006714
[ODUH] human metagenome; G_DNA_Subgingival plaque
830
905
+
Arg
TCT
[ENA]
¢þ
>WENV180958281
ODUL01002014
[ODUL] human metagenome; G_DNA_Supragingival plaque
6217
6292
+
Arg
TCT
[ENA]
¢þ
>WENV180973433
ODUW01005436
[ODUW] human metagenome; G_DNA_Supragingival plaque
4052
4127
+
Arg
TCT
[ENA]
¢þ
>WENV180975278
ODUY01003892
[ODUY] human metagenome; G_DNA_Supragingival plaque
278
203
-
Arg
TCT
[ENA]
¢þ
>WENV180982174
ODVE01189877
[ODVE] human metagenome; G_DNA_Supragingival plaque
218
143
-
Arg
TCT
[ENA]
¢þ
>WENV180987039
ODVK01003631
[ODVK] human metagenome; G_DNA_Supragingival plaque
340
265
-
Arg
TCT
[ENA]
¢þ
>WENV180988489
ODVL01001877
[ODVL] human metagenome; G_DNA_Tongue dorsum
2550
2475
-
Arg
TCT
[ENA]
¢þ
>WENV180991689
ODVO01000410
[ODVO] human metagenome; G_DNA_Buccal mucosa
10439
10514
+
Arg
TCT
[ENA]
¢þ
>WENV180992427
ODVP01005727
[ODVP] human metagenome; G_DNA_Buccal mucosa
90
15
-
Arg
TCT
[ENA]
¢þ
>WENV181003082
ODVX01004532
[ODVX] human metagenome; G_DNA_Supragingival plaque
1311
1236
-
Arg
TCT
[ENA]
¢þ
>WENV181005928
ODWA01000214
[ODWA] human metagenome; G_DNA_Buccal mucosa
9647
9722
+
Arg
TCT
[ENA]
¢þ
>WENV181012434
ODWK01000313
[ODWK] human metagenome; G_DNA_Supragingival plaque
6365
6440
+
Arg
TCT
[ENA]
¢þ
>WENV181019349
ODWU01002303
[ODWU] human metagenome; G_DNA_Supragingival plaque
1968
1893
-
Arg
TCT
[ENA]
¢þ
>WENV181025620
ODXB01008444
[ODXB] human metagenome; G_DNA_Buccal mucosa
791
716
-
Arg
TCT
[ENA]
¢þ
>WENV181027396
ODXD01000786
[ODXD] human metagenome; G_DNA_Buccal mucosa
434
359
-
Arg
TCT
[ENA]
¢þ
>WENV181029377
ODXF01000210
[ODXF] human metagenome; G_DNA_Supragingival plaque
25321
25396
+
Arg
TCT
[ENA]
¢þ
>WENV181049747
ODYD01001952
[ODYD] human metagenome; G_DNA_Supragingival plaque
3346
3271
-
Arg
TCT
[ENA]
¢þ
>WENV181067344
ODZI01013952
[ODZI] human metagenome; G_DNA_Supragingival plaque
1438
1363
-
Arg
TCT
[ENA]
¢þ
>WENV181070821
OEAE01012246
[OEAE] human metagenome; G_DNA_Supragingival plaque
1369
1294
-
Arg
TCT
[ENA]
¢þ
>WENV181075663
OEAP01000126
[OEAP] human metagenome; G_DNA_Supragingival plaque
14605
14530
-
Arg
TCT
[ENA]
¢þ
>WENV181079328
OEAS01004715
[OEAS] human metagenome; G_DNA_Supragingival plaque
2647
2572
-
Arg
TCT
[ENA]
¢þ
>WENV181083876
OEAV01030036
[OEAV] human metagenome; G_DNA_Supragingival plaque
708
633
-
Arg
TCT
[ENA]
¢þ
>WENV181107025
OEEI01001536
[OEEI] human metagenome; G_DNA_Supragingival plaque
1134
1059
-
Arg
TCT
[ENA]
¢þ
>WENV181137610
OEGJ01009194
[OEGJ] human metagenome; G_DNA_Supragingival plaque
2006
2081
+
Arg
TCT
[ENA]
¢þ
>WENV181143507
OEHM01001538
[OEHM] human metagenome; G_DNA_Supragingival plaque
5804
5879
+
Arg
TCT
[ENA]
¢þ
>WENV181155886
OEIE01000510
[OEIE] human metagenome; G_DNA_Supragingival plaque
14580
14505
-
Arg
TCT
[ENA]
¢þ
>WENV181159885
OEIK01000446
[OEIK] human metagenome; G_DNA_Supragingival plaque
9497
9572
+
Arg
TCT
[ENA]
¢þ
>WENV181179100
OEJT01001346
[OEJT] human metagenome; G_DNA_Supragingival plaque
9979
10054
+
Arg
TCT
[ENA]
¢þ
>WENV181180540
OEJU01000197
[OEJU] human metagenome; G_DNA_Supragingival plaque
27016
27091
+
Arg
TCT
[ENA]
¢þ
>WENV181580095
OGJZ01004966
[OGJZ] metagenome; Human gut stool
4665
4740
+
Arg
TCT
[ENA]
¢þ
>WENV181935862
OGYU01034417
[OGYU] human gut metagenome; faeces
167
92
-
Arg
TCT
[ENA]
¢þ
>C08009700
CP000725
Bacillota
Streptococcus gordonii str. Challis substr. CH1 [CP000725]
2193887
2193812
-
Arg
TCT
[Ensembl]
¡û
>WENV182539822
OIXV01018918
[OIXV] human gut metagenome; faeces
1996
2071
+
Arg
TCT
[ENA]
¢þ
>WENV182809433
OJWP01002915
[OJWP] human gut metagenome; human gut
380
305
-
Arg
TCT
[ENA]
¢þ
>WENV182829928
OKDT01004372
[OKDT] human gut metagenome; human gut
269
194
-
Arg
TCT
[ENA]
¢þ
>WENV183108174
OLNM01080625
[OLNM] human gut metagenome; faeces
420
495
+
Arg
TCT
[ENA]
¢þ
>WENV183142156
OLOK01000096
[OLOK] human gut metagenome; faeces
60935
61010
+
Arg
TCT
[ENA]
¢þ
>C181083191
CP023511
Bacillota
Streptococcus gordonii FDAARGOS_371 [CP023511]
641210
641285
+
Arg
TCT
-
¡û
>C181207257
LS483341
Bacillota
Streptococcus gordonii NCTC7865 [LS483341]
2184670
2184595
-
Arg
TCT
-
¡û
>C181209420
LS483375
Bacillota
Streptococcus gordonii NCTC3165 [LS483375]
2151856
2151781
-
Arg
TCT
-
¡û
>C191204399
LR134291
Bacillota
Streptococcus gordonii NCTC7868 [LR134291]
2193720
2193645
-
Arg
TCT
-
¡û
>C191222886
LR594041
Bacillota
Streptococcus gordonii NCTC9124 [LR594041]
2220975
2220900
-
Arg
TCT
-
¡û
>C191223426
LR594049
Bacillota
Streptococcus gordonii NCTC10231 [LR594049]
2182615
2182540
-
Arg
TCT
-
¡û
>W1810828669
QSKN01000002
Bacillota
Streptococcus gordonii AM27-4 [QSKN]
210840
210915
+
Arg
TCT
[ENA]
¡û
>C151096767
CP012648
Bacillota
Streptococcus gordonii [CP012648]
649764
649839
+
Arg
TCT
-
¡û
>W10102085
ACOI01000001
Bacillota
Streptococcus sp. 2_1_36FAA [ACOI]
14527
14452
-
Arg
TCT
[ENA]
¡û
>W11102241
ACOI01000001
Bacillota
Streptococcus sp. 2_1_36FAA [ACOI]
14527
14452
-
Arg
TCT
[ENA]
¡û
>W1511443432
JUSY01000002
Bacillota
Streptococcus cristatus 787_SOLI [JUSY]
2643
2568
-
Arg
TCT
[ENA]
¡û
>W1511444071
JUTP01000049
Bacillota
Streptococcus cristatus 771_SOLI [JUTP]
2636
2561
-
Arg
TCT
[ENA]
¡û
>W1511475061
JWCQ01000107
Bacillota
Streptococcus gordonii 1116_SGOR [JWCQ]
47283
47358
+
Arg
TCT
[ENA]
¡û
>W1511526033
JYGL01000002
Bacillota
Streptococcus gordonii G9B [JYGL]
14399
14324
-
Arg
TCT
[ENA]
¡û
>W1511526107
JYGN01000002
Bacillota
Streptococcus gordonii NCTC 10712 [JYGN]
653595
653670
+
Arg
TCT
[ENA]
¡û
>W1511536096
JYOZ01000001
Bacillota
Streptococcus gordonii I141 [JYOZ]
15237
15162
-
Arg
TCT
[ENA]
¡û
>W1511569513
LAKB01000005
Bacillota
Streptococcus gordonii IE35 [LAKB]
15398
15323
-
Arg
TCT
[ENA]
¡û
>W11171748
AFQU01000001
Bacillota
Streptococcus sp. oral taxon 056 oral taxon 056 str. F0418 [AFQU]
1170246
1170171
-
Arg
TCT
[ENA]
¡û
>W1610577163
LAVY01000016
Bacillota
Streptococcus gordonii [LAVY]
17424
17499
+
Arg
TCT
[ENA]
¡û
>W1610577180
LAVZ01000004
Bacillota
Streptococcus gordonii [LAVZ]
88610
88685
+
Arg
TCT
[ENA]
¡û
>W1610577221
LAWA01000001
Bacillota
Streptococcus gordonii [LAWA]
631091
631166
+
Arg
TCT
[ENA]
¡û
>W1610577440
LAWF01000001
Bacillota
Streptococcus gordonii [LAWF]
14497
14422
-
Arg
TCT
[ENA]
¡û
>W1610577637
LAWJ01000022
Bacillota
Streptococcus gordonii [LAWJ]
73066
73141
+
Arg
TCT
[ENA]
¡û
>W1610577727
LAWL01000019
Bacillota
Streptococcus gordonii [LAWL]
15175
15100
-
Arg
TCT
[ENA]
¡û
>W1610577752
LAWM01000005
Bacillota
Streptococcus gordonii [LAWM]
72982
73057
+
Arg
TCT
[ENA]
¡û
>W1610577790
LAWN01000003
Bacillota
Streptococcus gordonii [LAWN]
74341
74416
+
Arg
TCT
[ENA]
¡û
>W1610577892
LAWP01000006
Bacillota
Streptococcus gordonii [LAWP]
607771
607846
+
Arg
TCT
[ENA]
¡û
>W1610577948
LAWQ01000013
Bacillota
Streptococcus gordonii [LAWQ]
14520
14445
-
Arg
TCT
[ENA]
¡û
>W1610577972
LAWR01000002
Bacillota
Streptococcus gordonii [LAWR]
248226
248301
+
Arg
TCT
[ENA]
¡û
>W1610579014
LAYG01000005
Bacillota
Streptococcus gordonii [LAYG]
13562
13637
+
Arg
TCT
[ENA]
¡û
>W1610579090
LAYI01000003
Bacillota
Streptococcus gordonii [LAYI]
72982
73057
+
Arg
TCT
[ENA]
¡û
>W1610580517
LBCT01000010
Bacillota
Streptococcus gordonii [LBCT]
14547
14472
-
Arg
TCT
[ENA]
¡û
>W1610781059
LOBS01000010
Bacillota
Streptococcus gordonii [LOBS]
76432
76507
+
Arg
TCT
[ENA]
¡û
>W1610858724
LQRC01000219
Bacillota
Streptococcus gordonii [LQRC]
56148
56223
+
Arg
TCT
[ENA]
¡û
>W1610866740
LQWV01000012
Bacillota
Streptococcus gordonii [LQWV]
15223
15148
-
Arg
TCT
[ENA]
¡û
>W1610913388
LSJE01000120
Bacillota
Streptococcus sp. CCH8-G7 [LSJE]
2651
2576
-
Arg
TCT
[ENA]
¡û
>W1710695867
LAVY01000016
Bacillota
Streptococcus gordonii [LAVY]
17424
17499
+
Arg
TCT
[ENA]
¡û
>W1710695884
LAVZ01000004
Bacillota
Streptococcus gordonii [LAVZ]
88610
88685
+
Arg
TCT
[ENA]
¡û
>W1710695925
LAWA01000001
Bacillota
Streptococcus gordonii [LAWA]
631091
631166
+
Arg
TCT
[ENA]
¡û
>W1710696144
LAWF01000001
Bacillota
Streptococcus gordonii [LAWF]
14497
14422
-
Arg
TCT
[ENA]
¡û
>W1710696341
LAWJ01000022
Bacillota
Streptococcus gordonii [LAWJ]
73066
73141
+
Arg
TCT
[ENA]
¡û
>W1710696431
LAWL01000019
Bacillota
Streptococcus gordonii [LAWL]
15175
15100
-
Arg
TCT
[ENA]
¡û
>W1710696456
LAWM01000005
Bacillota
Streptococcus gordonii [LAWM]
72982
73057
+
Arg
TCT
[ENA]
¡û
>W1710696494
LAWN01000003
Bacillota
Streptococcus gordonii [LAWN]
74341
74416
+
Arg
TCT
[ENA]
¡û
>W1710696596
LAWP01000006
Bacillota
Streptococcus gordonii [LAWP]
607771
607846
+
Arg
TCT
[ENA]
¡û
>W1710696652
LAWQ01000013
Bacillota
Streptococcus gordonii [LAWQ]
14520
14445
-
Arg
TCT
[ENA]
¡û
>W1710696676
LAWR01000002
Bacillota
Streptococcus gordonii [LAWR]
248226
248301
+
Arg
TCT
[ENA]
¡û
>W1710697845
LAYG01000005
Bacillota
Streptococcus gordonii [LAYG]
13562
13637
+
Arg
TCT
[ENA]
¡û
>W1710697921
LAYI01000003
Bacillota
Streptococcus gordonii [LAYI]
72982
73057
+
Arg
TCT
[ENA]
¡û
>W1710699529
LBCT01000010
Bacillota
Streptococcus gordonii [LBCT]
14547
14472
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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