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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178630 (49 seq.)
>W1711073954
LSJB01000341
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
5408
5484
+
Ile
GAT
[ENA]
¡û
>W1711074281
LSJJ01000150
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
5416
5492
+
Ile
GAT
[ENA]
¡û
>W1711074334
LSJK01000282
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
5414
5490
+
Ile
GAT
[ENA]
¡û
>W1711074541
LSJQ01000127
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
9197
9121
-
Ile
GAT
[ENA]
¡û
>W1711074665
LSJS01000322
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
12087
12011
-
Ile
GAT
[ENA]
¡û
>W1711074942
LSJZ01000230
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
6115
6039
-
Ile
GAT
[ENA]
¡û
>W1711074946
LSJZ01000238
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
5402
5478
+
Ile
GAT
[ENA]
¡û
>W1711075200
LSKF01000026
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
26146
26222
+
Ile
GAT
[ENA]
¡û
>W1711075542
LSKM01000197
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
9215
9139
-
Ile
GAT
[ENA]
¡û
>W1711075725
LSKQ01000322
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
3680
3604
-
Ile
GAT
[ENA]
¡û
>W1711766280
MUYG01000008
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
268585
268509
-
Ile
GAT
[ENA]
¡û
>W1711766325
MUYH01000003
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
36181
36257
+
Ile
GAT
[ENA]
¡û
>W1711766417
MUYJ01000004
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
4922
4846
-
Ile
GAT
[ENA]
¡û
>W1711766468
MUYK01000003
Alphaproteobacteria
Erythrobacter colymbi [MUYK]
588648
588572
-
Ile
GAT
[ENA]
¡û
>W131058790
ANFX01000029
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
21825
21749
-
Ile
GAT
[ENA]
¡û
>WENV180103664
OAPA01115579
[OAPA] marine metagenome; ENVO:00002010
142
66
-
Ile
GAT
[ENA]
¢þ
>WENV182549631
OJBY01004007
[OJBY] seawater metagenome; Sea water
701
777
+
Ile
GAT
[ENA]
¢þ
>WENV171003518
NNBU01000234
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
84513
84437
-
Ile
GAT
[ENA]
¢þ
>WENV171003907
NNBV01004662
[NNBV] plant metagenome; symbiotic tissue sample KVS11
312646
312722
+
Ile
GAT
[ENA]
¢þ
>C181069574
CP022600
Alphaproteobacteria
Porphyrobacter sp. HT-58-2 [CP022600]
3243689
3243613
-
Ile
GAT
-
¡û
>C181072803
CP022889
Alphaproteobacteria
Tsuneonella mangrovi C9-11 [CP022889]
2208520
2208596
+
Ile
GAT
-
¡û
>C191188836
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
3724527
3724451
-
Ile
GAT
-
¡û
>C151048360
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
2517784
2517860
+
Ile
GAT
[Ensembl]
¡û
>C151048381
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
2263713
2263637
-
Ile
GAT
[Ensembl]
¡û
>C151048386
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
1254470
1254394
-
Ile
GAT
[Ensembl]
¡û
>C151079665
CP011310
Alphaproteobacteria
Aurantiacibacter atlanticus s21-N3 [CP011310]
2718179
2718103
-
Ile
GAT
[Ensembl]
¡û
>C151086183
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
127584
127660
+
Ile
GAT
[Ensembl]
¡û
>C151096918
CP012669
Alphaproteobacteria
Altererythrobacter epoxidivorans CGMCC 1.7731 [CP012669]
2074629
2074553
-
Ile
GAT
-
¡û
>W1510024372
CCBH010000005
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
3663
3587
-
Ile
GAT
[ENA]
¡û
>C11116154
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
154471
154547
+
Ile
GAT
[Ensembl]
¡û
>C11116163
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
1310556
1310632
+
Ile
GAT
[Ensembl]
¡û
>C11116179
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
3793054
3792978
-
Ile
GAT
[Ensembl]
¡û
>W1511398000
JTDI01000002
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
76496
76572
+
Ile
GAT
[ENA]
¡û
>C161099940
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
2980333
2980257
-
Ile
GAT
[Ensembl]
¡û
>W1610071259
BCTX01000153
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
1688
1764
+
Ile
GAT
[ENA]
¡û
>W121009719
AGFM01000099
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
2037
2113
+
Ile
GAT
[ENA]
¡û
>W1610913259
LSJB01000341
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
5408
5484
+
Ile
GAT
[ENA]
¡û
>W1610913586
LSJJ01000150
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
5416
5492
+
Ile
GAT
[ENA]
¡û
>W1610913639
LSJK01000282
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
5414
5490
+
Ile
GAT
[ENA]
¡û
>W1610913846
LSJQ01000127
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
9197
9121
-
Ile
GAT
[ENA]
¡û
>W1610913970
LSJS01000322
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
12087
12011
-
Ile
GAT
[ENA]
¡û
>W1610914247
LSJZ01000230
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
6115
6039
-
Ile
GAT
[ENA]
¡û
>W1610914251
LSJZ01000238
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
5402
5478
+
Ile
GAT
[ENA]
¡û
>W1610914505
LSKF01000026
Alphaproteobacteria
Erythrobacteraceae bacterium CCH12-C2 [LSKF]
26146
26222
+
Ile
GAT
[ENA]
¡û
>W1610914847
LSKM01000197
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
9215
9139
-
Ile
GAT
[ENA]
¡û
>W1610915030
LSKQ01000322
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
3680
3604
-
Ile
GAT
[ENA]
¡û
>W1710068624
BCTX01000153
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
1688
1764
+
Ile
GAT
[ENA]
¡û
>W1710593203
FRDF01000003
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
35479
35555
+
Ile
GAT
[ENA]
¡û
>W1710604598
FVZE01000029
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
2039
2115
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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