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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178646 (49 seq.)
>W1711069400
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
494830
494906
+
Arg
TCT
[ENA]
¡û
>W1711072486
LSHQ01000030
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
125439
125515
+
Arg
TCT
[ENA]
¡û
>W1711072775
LSHX01000033
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
128072
127996
-
Arg
TCT
[ENA]
¡û
>W1711073037
LSIE01000046
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
960
884
-
Arg
TCT
[ENA]
¡û
>W1711073958
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
38379
38455
+
Arg
TCT
[ENA]
¡û
>W1711073960
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5792
5716
-
Arg
TCT
[ENA]
¡û
>W1711075120
LSKD01000026
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
28762
28838
+
Arg
TCT
[ENA]
¡û
>W1711075248
LSKG01000033
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
55435
55511
+
Arg
TCT
[ENA]
¡û
>W1711075364
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
28756
28832
+
Arg
TCT
[ENA]
¡û
>W1711075366
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
39997
39921
-
Arg
TCT
[ENA]
¡û
>W1711075605
LSKO01001220
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
14299
14223
-
Arg
TCT
[ENA]
¡û
>W1711075662
LSKP01000054
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
5743
5667
-
Arg
TCT
[ENA]
¡û
>W1711437767
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
764328
764404
+
Arg
TCT
[ENA]
¡û
>C171047045
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
3328793
3328869
+
Arg
TCT
-
¡û
>C171075873
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
1157057
1157133
+
Arg
TCT
-
¡û
>C171115169
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
203754
203678
-
Arg
TCT
-
¡û
>W131046811
AMSR01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
84876
84952
+
Arg
TCT
[ENA]
¡û
>C027925
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1056363
1056439
+
Arg
TCT
[Ensembl]
¡û
>WENV181295880
OFHJ01001494
[OFHJ] soil metagenome; Clay
4599
4523
-
Arg
TCT
[ENA]
¢þ
>WENV170553114
CXWK01008154
[CXWK] wastewater metagenome; activated sludge
4294
4218
-
Arg
TCT
[ENA]
¢þ
>C181088861
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1058721
1058797
+
Arg
TCT
-
¡û
>C181088912
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1058721
1058797
+
Arg
TCT
-
¡û
>C181089239
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1058720
1058796
+
Arg
TCT
-
¡û
>C191145586
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1056319
1056395
+
Arg
TCT
-
¡û
>C191145637
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1056319
1056395
+
Arg
TCT
-
¡û
>C191145688
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1056319
1056395
+
Arg
TCT
-
¡û
>W09133970
ACQU01000005
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
107950
107874
-
Arg
TCT
[ENA]
¡û
>W1910182420
BJMW01000009
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
598
674
+
Arg
TCT
[ENA]
¡û
>C141008826
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
318869
318793
-
Arg
TCT
[Ensembl]
¡û
>W1810109386
PHHF01000026
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
87747
87671
-
Arg
TCT
[ENA]
¡û
>C151004628
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
318644
318568
-
Arg
TCT
[Ensembl]
¡û
>C151004679
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
318644
318568
-
Arg
TCT
[Ensembl]
¡û
>C10114612
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
314227
314151
-
Arg
TCT
[Ensembl]
¡û
>W11167340
AFMP01000014
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
89885
89809
-
Arg
TCT
[ENA]
¡û
>C121003170
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
314510
314434
-
Arg
TCT
[Ensembl]
¡û
>C121015286
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
311420
311344
-
Arg
TCT
[Ensembl]
¡û
>C131011854
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
2744685
2744761
+
Arg
TCT
[Ensembl]
¡û
>W1610909928
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
494830
494906
+
Arg
TCT
[ENA]
¡û
>W1610911746
LSHQ01000030
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
125439
125515
+
Arg
TCT
[ENA]
¡û
>W1610912035
LSHX01000033
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
128072
127996
-
Arg
TCT
[ENA]
¡û
>W1610912342
LSIE01000046
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
960
884
-
Arg
TCT
[ENA]
¡û
>W1610913263
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
38379
38455
+
Arg
TCT
[ENA]
¡û
>W1610913265
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5792
5716
-
Arg
TCT
[ENA]
¡û
>W1610914425
LSKD01000026
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
28762
28838
+
Arg
TCT
[ENA]
¡û
>W1610914553
LSKG01000033
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
55435
55511
+
Arg
TCT
[ENA]
¡û
>W1610914669
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
28756
28832
+
Arg
TCT
[ENA]
¡û
>W1610914671
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
39997
39921
-
Arg
TCT
[ENA]
¡û
>W1610914910
LSKO01001220
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
14299
14223
-
Arg
TCT
[ENA]
¡û
>W1610914967
LSKP01000054
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
5743
5667
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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