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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178712 (35 seq.)
>W131037616
AMFF01000405
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
8636
8560
-
Val
GAC
[ENA]
¡û
>W131038493
AMGC01000436
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
1065
1141
+
Val
GAC
[ENA]
¡û
>W1711138280
LVCQ01000093
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
8179
8103
-
Val
GAC
[ENA]
¡û
>W131195168
ASSK01000049
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
10146
10222
+
Val
GAC
[ENA]
¡û
>W1711372824
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
1363348
1363272
-
Val
GAC
[ENA]
¡û
>C171026508
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
671652
671576
-
Val
GAC
-
¡û
>C171026564
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
802178
802102
-
Val
GAC
-
¡û
>C171026591
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
2562017
2562093
+
Val
GAC
-
¡û
>C171026647
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
2559212
2559288
+
Val
GAC
-
¡û
>C171026703
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
2442448
2442524
+
Val
GAC
-
¡û
>C171026760
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
2441575
2441651
+
Val
GAC
-
¡û
>C171026816
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
2442193
2442269
+
Val
GAC
-
¡û
>C171026879
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
3097056
3097132
+
Val
GAC
-
¡û
>C171026966
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
285093
285017
-
Val
GAC
-
¡û
>C171026975
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
462877
462953
+
Val
GAC
-
¡û
>C171027040
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
2441668
2441744
+
Val
GAC
-
¡û
>C171027103
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
3097062
3097138
+
Val
GAC
-
¡û
>C171027159
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
3097061
3097137
+
Val
GAC
-
¡û
>C171027199
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
463028
463104
+
Val
GAC
-
¡û
>WENV180595254
OCPB01058515
[OCPB] marine metagenome; ENVO:00002149
188
264
+
Val
GAC
[ENA]
¢þ
>W141221222
AZYQ02000183
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
15395
15319
-
Val
GAC
[ENA]
¡û
>C191116618
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
473358
473434
+
Val
GAC
-
¡û
>W1911652723
QBEV01000023
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
16068
15992
-
Val
GAC
[ENA]
¡û
>W1810054361
PDFD01000008
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
9128
9052
-
Val
GAC
[ENA]
¡û
>C151086976
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
901667
901743
+
Val
GAC
[Ensembl]
¡û
>C151095285
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
462876
462952
+
Val
GAC
-
¡û
>W1511336306
JRAD02000026
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
15398
15322
-
Val
GAC
[ENA]
¡û
>W1511337037
JRAV02000024
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
15092
15016
-
Val
GAC
[ENA]
¡û
>W1511346397
JRHD01000008
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
10040
10116
+
Val
GAC
[ENA]
¡û
>W1511346858
JRHP01000007
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
10205
10281
+
Val
GAC
[ENA]
¡û
>W1511657168
LELB01000152
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
15352
15276
-
Val
GAC
[ENA]
¡û
>C161042045
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
2602805
2602729
-
Val
GAC
[Ensembl]
¡û
>C161062460
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
463043
463119
+
Val
GAC
-
¡û
>C161063127
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
463146
463222
+
Val
GAC
-
¡û
>W1610949366
LVCQ01000093
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
8179
8103
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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