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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178758 (93 seq.)
>A171001190
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1692536
1692462
-
Lys
CTT
-
¡û
>A171001413
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
1546223
1546150
-
Lys
CTT
-
¡û
>A171002703
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1455768
1455841
+
Lys
CTT
-
¡û
>A171004135
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1185355
1185429
+
Lys
CTT
-
¡û
>A171004398
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1323514
1323588
+
Lys
CTT
-
¡û
>A171006156
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1323855
1323929
+
Lys
CTT
-
¡û
>A171006224
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1566147
1566073
-
Lys
CTT
-
¡û
>A171006988
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
56758
56831
+
Lys
CTT
-
¡û
>WENV170679563
LFCJ01000026
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
29478
29551
+
Lys
CTT
[ENA]
¢þ
>WENV170680023
LFCJ01002811
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6523
6450
-
Lys
CTT
[ENA]
¢þ
>WENV170680126
LFCJ01004628
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
9759
9833
+
Lys
CTT
[ENA]
¢þ
>WENV170680314
LFCJ01007973
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7508
7581
+
Lys
CTT
[ENA]
¢þ
>WENV170681335
LFFM01000507
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
53
126
+
Lys
CTT
[ENA]
¢þ
>WENV170681426
LFFM01000801
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
77
3
-
Lys
CTT
[ENA]
¢þ
>WENV170681476
LFFM01001046
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
19669
19595
-
Lys
CTT
[ENA]
¢þ
>WENV170682040
LFFM01005299
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7263
7337
+
Lys
CTT
[ENA]
¢þ
>WENV170682046
LFFM01005489
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV170682054
LFFM01005544
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6654
6728
+
Lys
CTT
[ENA]
¢þ
>WENV170702377
LKMJ01001571
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
76
2
-
Lys
CTT
[ENA]
¢þ
>WENV170702892
LKMJ01004596
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10294
10221
-
Lys
CTT
[ENA]
¢þ
>WENV170703012
LKMJ01005552
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10830
10904
+
Lys
CTT
[ENA]
¢þ
>WENV170703048
LKMJ01005853
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1150
1224
+
Lys
CTT
[ENA]
¢þ
>WENV170703717
LKMJ01015979
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3893
3967
+
Lys
CTT
[ENA]
¢þ
>WENV170703863
LKMJ01017652
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6243
6169
-
Lys
CTT
[ENA]
¢þ
>WENV170704128
LKMJ01023236
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
334
407
+
Lys
CTT
[ENA]
¢þ
>W1910186254
CCDK010000005
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
1127930
1127857
-
Lys
CTT
[ENA]
¡û
>W1910193536
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
438005
438079
+
Lys
CTT
[ENA]
¡û
>W1910226686
FMZP01000005
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
62617
62691
+
Lys
CTT
[ENA]
¡û
>W1910226919
FNFE01000003
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
248089
248015
-
Lys
CTT
[ENA]
¡û
>W1910227025
FNHL01000003
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
390671
390745
+
Lys
CTT
[ENA]
¡û
>W1910229639
FOAD01000007
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
54663
54737
+
Lys
CTT
[ENA]
¡û
>W1910229770
FODV01000006
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
120707
120781
+
Lys
CTT
[ENA]
¡û
>W1910230522
FOTC01000007
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
112715
112789
+
Lys
CTT
[ENA]
¡û
>W1910230830
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1350006
1350080
+
Lys
CTT
[ENA]
¡û
>W1910282437
FRAN01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
447783
447858
+
Lys
CTT
[ENA]
¡û
>W1910340468
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
1127075
1127000
-
Lys
CTT
[ENA]
¡û
>W1910568488
JDTG01000004
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
222467
222541
+
Lys
CTT
[ENA]
¡û
>W1910568546
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
681047
681122
+
Lys
CTT
[ENA]
¡û
>W1910572578
JMIP02000020
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
62994
62920
-
Lys
CTT
[ENA]
¡û
>W1910573488
JPES01000085
Euryarchaeota
Haloferax sp. ATB1 [JPES]
7108
7182
+
Lys
CTT
[ENA]
¡û
>W1910696301
MEIH01000361
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
41522
41597
+
Lys
CTT
[ENA]
¡û
>W1911629751
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
51554
51628
+
Lys
CTT
[ENA]
¡û
>W1911629810
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
1594248
1594175
-
Lys
CTT
[ENA]
¡û
>W1911629871
PSYU01000002
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
54045
54119
+
Lys
CTT
[ENA]
¡û
>W1911629908
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
1317540
1317467
-
Lys
CTT
[ENA]
¡û
>W1911629996
PSYW01000005
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
51551
51625
+
Lys
CTT
[ENA]
¡û
>W1911630008
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
1320278
1320205
-
Lys
CTT
[ENA]
¡û
>W1911630060
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
1702555
1702481
-
Lys
CTT
[ENA]
¡û
>W1911655674
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
51554
51628
+
Lys
CTT
[ENA]
¡û
>W1911655717
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
54002
54075
+
Lys
CTT
[ENA]
¡û
>W1911709489
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
1594248
1594175
-
Lys
CTT
[ENA]
¡û
>W1911709538
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
1594248
1594175
-
Lys
CTT
[ENA]
¡û
>W1911717992
QQTY01000002
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
954273
954347
+
Lys
CTT
[ENA]
¡û
>W1610001064
ACIT01000004
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
306542
306468
-
Lys
CTT
[ENA]
¡û
>W1610002971
AEMG01000007
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
107860
107935
+
Lys
CTT
[ENA]
¡û
>W1610004066
AGFZ01000103
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
81742
81816
+
Lys
CTT
[ENA]
¡û
>W1610005868
ALJD01000002
Euryarchaeota
Halogranum salarium B-1 [ALJD]
42572
42498
-
Lys
CTT
[ENA]
¡û
>W1610011506
ANPG01000101
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
3357
3281
-
Lys
CTT
[ENA]
¡û
>W1610011792
AOHU01000029
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
110105
110032
-
Lys
CTT
[ENA]
¡û
>W1610011922
AOHW01000042
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
204288
204214
-
Lys
CTT
[ENA]
¡û
>W1610012091
AOIA01000145
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
2918
2992
+
Lys
CTT
[ENA]
¡û
>W1610012251
AOIE01000067
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
15617
15691
+
Lys
CTT
[ENA]
¡û
>W1610012631
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
100912
100839
-
Lys
CTT
[ENA]
¡û
>W1610013453
AOLD01000017
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
30698
30774
+
Lys
CTT
[ENA]
¡û
>W1610013523
AOLE01000017
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
36821
36897
+
Lys
CTT
[ENA]
¡û
>W1610013557
AOLF01000014
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
119391
119315
-
Lys
CTT
[ENA]
¡û
>W1610013625
AOLG01000014
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
111977
111904
-
Lys
CTT
[ENA]
¡û
>W1610013672
AOLH01000015
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
14084
14160
+
Lys
CTT
[ENA]
¡û
>W1610013707
AOLI01000012
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
190881
190807
-
Lys
CTT
[ENA]
¡û
>W1610013794
AOLJ01000022
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
20923
20999
+
Lys
CTT
[ENA]
¡û
>W1610013828
AOLK01000018
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
112418
112344
-
Lys
CTT
[ENA]
¡û
>W1610013855
AOLL01000008
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
30580
30656
+
Lys
CTT
[ENA]
¡û
>W1610013919
AOLM01000011
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
83799
83723
-
Lys
CTT
[ENA]
¡û
>W1610013956
AOLN01000001
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
42247
42321
+
Lys
CTT
[ENA]
¡û
>W1610014007
AOLO01000002
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
52873
52947
+
Lys
CTT
[ENA]
¡û
>W1610014096
AOLP01000018
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
53748
53824
+
Lys
CTT
[ENA]
¡û
>W1610014448
AOMA01000005
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
28902
28828
-
Lys
CTT
[ENA]
¡û
>W1610018866
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
395123
395048
-
Lys
CTT
[ENA]
¡û
>W1610019002
ARPH01000001
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
224426
224352
-
Lys
CTT
[ENA]
¡û
>W1610046857
BBCV01000027
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
49202
49277
+
Lys
CTT
[ENA]
¡û
>W1610083028
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
345161
345087
-
Lys
CTT
[ENA]
¡û
>W1610682204
LKMM01000119
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
7508
7581
+
Lys
CTT
[ENA]
¡û
>W1610682293
LKMR01000024
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
10830
10904
+
Lys
CTT
[ENA]
¡û
>W1610682550
LKNC01000137
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
7263
7337
+
Lys
CTT
[ENA]
¡û
>W1610682581
LKND01000062
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
77
3
-
Lys
CTT
[ENA]
¡û
>W1610682586
LKND01000072
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
19669
19595
-
Lys
CTT
[ENA]
¡û
>W1610682613
LKNF01000006
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
53
126
+
Lys
CTT
[ENA]
¡û
>W1610682634
LKNF01000137
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
75
2
-
Lys
CTT
[ENA]
¡û
>W1610682667
LKNG01000139
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
6654
6728
+
Lys
CTT
[ENA]
¡û
>W1610784308
LOEP01000029
Euryarchaeota
Haloferax sp. Q22 [LOEP]
51794
51870
+
Lys
CTT
[ENA]
¡û
>W1610799824
LOPV01000020
Euryarchaeota
Haloferax profundi SB29 [LOPV]
58532
58456
-
Lys
CTT
[ENA]
¡û
>W1610799888
LOPW01000045
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
53787
53714
-
Lys
CTT
[ENA]
¡û
>W1610986933
LWHG01000021
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
7674
7748
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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