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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178762 (24 seq.)
>WENV180275258
OBHT01001039
[OBHT] metagenome; hydrothermal vent
212
288
+
Gly
GCC
[ENA]
¢þ
>WENV180287267
OBIK01007400
[OBIK] hydrothermal vent metagenome; sea water
675
599
-
Gly
GCC
[ENA]
¢þ
>WENV180287839
OBIL01006740
[OBIL] metagenome; hydrothermal vent
432
356
-
Gly
GCC
[ENA]
¢þ
>WENV180581935
OCML01035072
[OCML] metagenome; diffuse fluid
142
218
+
Gly
GCC
[ENA]
¢þ
>WENV180634451
OCRB01010881
[OCRB] metagenome; diffuse fluid
523
599
+
Gly
GCC
[ENA]
¢þ
>WENV181207613
OFAZ01006647
[OFAZ] metagenome; hydrothermal vent
481
557
+
Gly
GCC
[ENA]
¢þ
>WENV181208434
OFBB01012874
[OFBB] metagenome; hydrothermal vent
181
257
+
Gly
GCC
[ENA]
¢þ
>WENV181209564
OFBE01010474
[OFBE] metagenome; hydrothermal vent
490
566
+
Gly
GCC
[ENA]
¢þ
>WENV181210647
OFBH01018467
[OFBH] metagenome; hydrothermal vent
127
51
-
Gly
GCC
[ENA]
¢þ
>WENV181211086
OFBJ01008504
[OFBJ] metagenome; hydrothermal vent
435
359
-
Gly
GCC
[ENA]
¢þ
>WENV181212891
OFBU01000798
[OFBU] metagenome; hydrothermal vent
1744
1820
+
Gly
GCC
[ENA]
¢þ
>WENV181213380
OFBV01001086
[OFBV] metagenome; hydrothermal vent
1462
1386
-
Gly
GCC
[ENA]
¢þ
>WENV181213941
OFBW01003303
[OFBW] metagenome; hydrothermal vent
1680
1756
+
Gly
GCC
[ENA]
¢þ
>WENV181214583
OFBY01002365
[OFBY] metagenome; hydrothermal vent
438
362
-
Gly
GCC
[ENA]
¢þ
>WENV181215007
OFBZ01001007
[OFBZ] metagenome; hydrothermal vent
1676
1752
+
Gly
GCC
[ENA]
¢þ
>WENV181215500
OFCA01001085
[OFCA] metagenome; hydrothermal vent
1553
1629
+
Gly
GCC
[ENA]
¢þ
>WENV181216512
OFCC01001291
[OFCC] metagenome; hydrothermal vent
133
57
-
Gly
GCC
[ENA]
¢þ
>WENV181226602
OFDL01012791
[OFDL] metagenome; hydrothermal vent
135
59
-
Gly
GCC
[ENA]
¢þ
>WENV181228443
OFDO01027294
[OFDO] metagenome; hydrothermal vent
380
456
+
Gly
GCC
[ENA]
¢þ
>C191044921
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1760073
1759997
-
Gly
GCC
-
¡û
>C191044937
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
79856
79780
-
Gly
GCC
-
¡û
>C191051456
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
68810
68734
-
Gly
GCC
-
¡û
>C191177827
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
108288
108364
+
Gly
GCC
-
¡û
>C09108077
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
72292
72216
-
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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