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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178799 (119 seq.)
>W1710809618
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
37648
37572
-
Met
CAT
[ENA]
¡û
>W1710809619
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
37493
37417
-
Met
CAT
[ENA]
¡û
>W1711055056
LRUH01000042
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
6819
6895
+
Met
CAT
[ENA]
¡û
>W1711088430
LSYX01000035
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
892
968
+
Met
CAT
[ENA]
¡û
>W1711088494
LSYY01000162
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
27469
27393
-
Met
CAT
[ENA]
¡û
>W1711175322
LWER01000456
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
45908
45832
-
Met
CAT
[ENA]
¡û
>W1711229510
LXYM01000044
Alphaproteobacteria
Sulfitobacter geojensis [LXYM]
604191
604115
-
Met
CAT
[ENA]
¡û
>W1711258806
LYUV01000001
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
257
181
-
Met
CAT
[ENA]
¡û
>W1711258840
LYUW01000002
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
415
339
-
Met
CAT
[ENA]
¡û
>W1711258898
LYUX01000059
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
424
348
-
Met
CAT
[ENA]
¡û
>W1711258935
LYUY01000101
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
415
339
-
Met
CAT
[ENA]
¡û
>W1711745717
MUJL01000111
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
3559
3483
-
Met
CAT
[ENA]
¡û
>W1711745736
MUJM01000057
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
3554
3478
-
Met
CAT
[ENA]
¡û
>W131180835
ARNL01000008
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
1720
1644
-
Met
CAT
[ENA]
¡û
>W131180847
ARNL01000040
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
163737
163813
+
Met
CAT
[ENA]
¡û
>W131180867
ARNL01000045
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
84
8
-
Met
CAT
[ENA]
¡û
>W131052818
AMZJ01000058
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
20310
20234
-
Met
CAT
[ENA]
¡û
>W131216088
ATVN01000030
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
442
366
-
Met
CAT
[ENA]
¡û
>W131242650
CAOH01000084
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
5433
5509
+
Met
CAT
[ENA]
¡û
>W131243121
CAOU02000037
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
5689
5613
-
Met
CAT
[ENA]
¡û
>C026841
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
1107384
1107308
-
Met
CAT
[Ensembl]
¡û
>C171047849
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
18675
18751
+
Met
CAT
-
¡û
>C171047856
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
638326
638402
+
Met
CAT
-
¡û
>C171047870
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
3232395
3232319
-
Met
CAT
-
¡û
>C171047879
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
2473765
2473689
-
Met
CAT
-
¡û
>C171092037
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
2498564
2498640
+
Met
CAT
-
¡û
>C171092060
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
2025366
2025290
-
Met
CAT
-
¡û
>C171092066
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
1593722
1593646
-
Met
CAT
-
¡û
>C171092069
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
1283137
1283061
-
Met
CAT
-
¡û
>WENV180085327
MPMD02312730
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
389
465
+
fMet
CAT
[ENA]
¢þ
>WENV180104727
OAPC01083582
[OAPC] marine metagenome; na
325
401
+
fMet
CAT
[ENA]
¢þ
>WENV180115392
OAPT01000165
[OAPT] marine metagenome; seawater
481
405
-
fMet
CAT
[ENA]
¢þ
>w005397
AAGB01000016
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
2595
2671
+
Met
CAT
[ENA]
¡û
>WENV180375419
OBOL01008460
[OBOL] marine metagenome; Surface water
319
243
-
fMet
CAT
[ENA]
¢þ
>W141065609
AQQE01000002
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
4354
4278
-
Met
CAT
[ENA]
¡û
>W141076289
ATDO01000103
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
3167
3243
+
Met
CAT
[ENA]
¡û
>W141078103
ATHO01000107
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
530
454
-
Met
CAT
[ENA]
¡û
>W141078112
ATHO01000140
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
1405
1481
+
Met
CAT
[ENA]
¡û
>W141078117
ATHO01000149
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
32463
32387
-
Met
CAT
[ENA]
¡û
>W141145093
AWUH01000142
Alphaproteobacteria
Wolbachia endosymbiont of Glossina morsitans morsitans [AWUH]
1279
1355
+
Met
CAT
[ENA]
¡û
>W141145099
AWUH01000148
Alphaproteobacteria
Wolbachia endosymbiont of Glossina morsitans morsitans [AWUH]
13622
13546
-
Met
CAT
[ENA]
¡û
>W141240215
CAGB01000077
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
101
25
-
Met
CAT
[ENA]
¡û
>W141284796
JAMD01000037
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H3 [JAMD]
6036
6112
+
Met
CAT
[ENA]
¡û
>C08011419
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
973237
973164
-
Met
CAT
[Ensembl]
¡û
>WENV170570125
FLMP01430202
[FLMP] seawater metagenome; seawater
103
27
-
Met
CAT
[ENA]
¢þ
>WENV170738490
LULP01000461
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
731
807
+
Met
CAT
[ENA]
¢þ
>WENV170825181
MDSY01088509
[MDSY] marine metagenome; seawater
3560
3484
-
Met
CAT
[ENA]
¢þ
>WENV170826891
MDSY01118990
[MDSY] marine metagenome; seawater
579
655
+
Met
CAT
[ENA]
¢þ
>WENV170827858
MDSY01137901
[MDSY] marine metagenome; seawater
410
334
-
Met
CAT
[ENA]
¢þ
>WENV170991093
MWWA01109275
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
506
430
-
Met
CAT
[ENA]
¢þ
>WENV170991331
MWWA01168204
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
363
439
+
Met
CAT
[ENA]
¢þ
>WENV170991340
MWWA01170617
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
156
232
+
Met
CAT
[ENA]
¢þ
>WENV170991720
MWWA01298851
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
395
319
-
Met
CAT
[ENA]
¢þ
>C191074323
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
474728
474804
+
Met
CAT
-
¡û
>C191123129
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
116767
116843
+
Met
CAT
-
¡û
>C191123163
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
116768
116844
+
Met
CAT
-
¡û
>C191188709
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
73515
73591
+
Met
CAT
-
¡û
>W141807776
JPOU01000072
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
4606
4682
+
Met
CAT
[ENA]
¡û
>W141812296
JQAM01000036
Alphaproteobacteria
Wolbachia pipientis [JQAM]
17204
17128
-
Met
CAT
[ENA]
¡û
>W09113855
ABZA01000001
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
197122
197046
-
Met
CAT
[ENA]
¡û
>W09121804
ACFP01000050
Alphaproteobacteria
Wolbachia endosymbiont of Muscidifurax uniraptor [ACFP]
1169
1093
-
Met
CAT
[ENA]
¡û
>W1910213465
FMKF01000062
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
1244
1168
-
Met
CAT
[ENA]
¡û
>W1910753964
MKIF01000089
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
4307
4231
-
Met
CAT
[ENA]
¡û
>W1910759045
MLZJ01000164
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
4404
4328
-
Met
CAT
[ENA]
¡û
>W1910760292
MNCG01000165
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
7668
7744
+
Met
CAT
[ENA]
¡û
>W1910794357
MRWX01000012
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
2673
2749
+
Met
CAT
[ENA]
¡û
>W1910802367
MSYL01000277
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
4137
4213
+
Met
CAT
[ENA]
¡û
>C09111272
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
1223705
1223629
-
Met
CAT
[Ensembl]
¡û
>W1911239460
NSDR01000078
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
7943
8019
+
Met
CAT
[ENA]
¡û
>W1911239480
NSDS01000013
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
7755
7831
+
Met
CAT
[ENA]
¡û
>W1911239544
NSDT01000119
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
7943
8019
+
Met
CAT
[ENA]
¡û
>W1911281121
NTHL01000080
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
5572
5496
-
Met
CAT
[ENA]
¡û
>W1911412149
NWVH01000034
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
116
40
-
Met
CAT
[ENA]
¡û
>W1911412195
NWVI01000078
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
5158
5234
+
Met
CAT
[ENA]
¡û
>W1911412258
NWVJ01000106
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVJ]
2748
2824
+
Met
CAT
[ENA]
¡û
>W1911412268
NWVK01000024
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVK]
15173
15249
+
Met
CAT
[ENA]
¡û
>W1911545118
OUNE01000099
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
893
817
-
Met
CAT
[ENA]
¡û
>W1911545142
OUNF01000150
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
14273
14197
-
Met
CAT
[ENA]
¡û
>W1810758345
QPIP01000029
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
6836
6912
+
Met
CAT
[ENA]
¡û
>C151102217
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
1107162
1107086
-
Met
CAT
[Ensembl]
¡û
>ENV09001652
ACQI01000650
Hydrothermal vent metagenome LCHCB.C1
474
398
-
Met
CAT
[ENA]
¡û
>W1510562613
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
470482
470406
-
Met
CAT
[ENA]
¡û
>W1510647424
CVPC01000006
Alphaproteobacteria
Nereida ignava CECT 5292 [CVPC]
505
581
+
Met
CAT
[ENA]
¡û
>W1510647436
CVPC01000016
Alphaproteobacteria
Nereida ignava CECT 5292 [CVPC]
518
594
+
Met
CAT
[ENA]
¡û
>W1510647448
CVPC01000062
Alphaproteobacteria
Nereida ignava CECT 5292 [CVPC]
230
154
-
Met
CAT
[ENA]
¡û
>W1511536225
JYPC01000055
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
24244
24168
-
Met
CAT
[ENA]
¡û
>W1511564693
LADY01000039
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
500
576
+
Met
CAT
[ENA]
¡û
>W1511564697
LADY01000051
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
77
1
-
Met
CAT
[ENA]
¡û
>W1511564707
LADY01000060
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
505
581
+
Met
CAT
[ENA]
¡û
>W11145946
AERW01000226
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
248
172
-
Met
CAT
[ENA]
¡û
>W1511592085
LBIC01000001
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
516976
516900
-
Met
CAT
[ENA]
¡û
>W1511592111
LBIC01000005
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
52361
52437
+
Met
CAT
[ENA]
¡û
>W1511698395
LGHT01000002
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
5911
5987
+
Met
CAT
[ENA]
¡û
>W1511698398
LGHT01000018
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
1578
1502
-
Met
CAT
[ENA]
¡û
>W1511698475
LGHV01000002
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
429
353
-
Met
CAT
[ENA]
¡û
>W11185736
CACK01000104
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
5423
5499
+
Met
CAT
[ENA]
¡û
>W1610092022
CXSU01000003
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
78
2
-
Met
CAT
[ENA]
¡û
>W1610092023
CXSU01000005
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
13
89
+
Met
CAT
[ENA]
¡û
>W1610092050
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
1685149
1685073
-
Met
CAT
[ENA]
¡û
>C131009113
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
597362
597438
+
Met
CAT
[Ensembl]
¡û
>C131009157
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
1134746
1134670
-
Met
CAT
[Ensembl]
¡û
>W1610673724
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
37648
37572
-
Met
CAT
[ENA]
¡û
>W1610673725
LKEQ01000009
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
37493
37417
-
Met
CAT
[ENA]
¡û
>W1610896102
LRUH01000042
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
6819
6895
+
Met
CAT
[ENA]
¡û
>W1610922969
LSYX01000035
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
892
968
+
Met
CAT
[ENA]
¡û
>W1610923033
LSYY01000162
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
27469
27393
-
Met
CAT
[ENA]
¡û
>W1611021071
LYUV01000001
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
257
181
-
Met
CAT
[ENA]
¡û
>W1611021105
LYUW01000002
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
415
339
-
Met
CAT
[ENA]
¡û
>W1611021163
LYUX01000059
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
424
348
-
Met
CAT
[ENA]
¡û
>W1611021200
LYUY01000101
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
415
339
-
Met
CAT
[ENA]
¡û
>W1710095379
CXSU01000003
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
78
2
-
Met
CAT
[ENA]
¡û
>W1710095380
CXSU01000005
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
13
89
+
Met
CAT
[ENA]
¡û
>W1710095407
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
1685149
1685073
-
Met
CAT
[ENA]
¡û
>W1710514305
FNAV01000041
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
266
342
+
Met
CAT
[ENA]
¡û
>W1710515201
FNBP01000016
Alphaproteobacteria
Sulfitobacter delicatus [FNBP]
672
748
+
Met
CAT
[ENA]
¡û
>W1710531943
FNPX01000042
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
5788
5864
+
Met
CAT
[ENA]
¡û
>W1710540030
FNWK01000001
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
2107700
2107776
+
Met
CAT
[ENA]
¡û
>W1710542245
FNYZ01000012
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
174313
174237
-
Met
CAT
[ENA]
¡û
>W1710583517
FQUV01000019
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
108
32
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
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Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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