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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178815 (67 seq.)
>W1710852897
LLWC01000024
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
147119
147043
-
Pro
GGG
[ENA]
¡û
>W1710852970
LLWE01000039
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
9569
9493
-
Pro
GGG
[ENA]
¡û
>W1710859445
LMCD01000020
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
388379
388455
+
Pro
GGG
[ENA]
¡û
>W1710859635
LMCG01000072
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
52471
52547
+
Pro
GGG
[ENA]
¡û
>W1711167035
LVVZ01000019
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
347153
347229
+
Pro
GGG
[ENA]
¡û
>W1711334242
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
115616
115540
-
Pro
GGG
[ENA]
¡û
>W1711334288
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
115967
115891
-
Pro
GGG
[ENA]
¡û
>W1711510448
MLAX01000006
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
356286
356210
-
Pro
GGG
[ENA]
¡û
>C171097435
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
276924
277000
+
Pro
GGG
-
¡û
>W131231508
AUIM01000004
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
136153
136077
-
Pro
GGG
[ENA]
¡û
>W131229335
AUGS01000005
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
79374
79298
-
Pro
GGG
[ENA]
¡û
>w020415
AAUW01000001
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
418323
418245
-
Pro
GGG
[ENA]
¡û
>W141152657
AXBY01000070
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
71118
71042
-
Pro
GGG
[ENA]
¡û
>W141152924
AXCE01000006
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
71118
71042
-
Pro
GGG
[ENA]
¡û
>W141200791
AYYG01000101
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
58408
58332
-
Pro
GGG
[ENA]
¡û
>W141229498
BAMS01000002
Alphaproteobacteria
Sneathiella glossodoripedis JCM 23214 [BAMS]
7787
7863
+
Pro
GGG
[ENA]
¡û
>WENV170155541
CEOG01037805
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7028
6952
-
Pro
GGG
[ENA]
¢þ
>WENV170201083
CEPP01071521
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
40
116
+
Pro
GGG
[ENA]
¢þ
>WENV170469596
CEVF01128088
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
212
136
-
Pro
GGG
[ENA]
¢þ
>WENV170652276
JRYH01000507
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
43612
43688
+
Pro
GGG
[ENA]
¢þ
>WENV170728300
LULE01018265
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
512
436
-
Pro
GGG
[ENA]
¢þ
>WENV170779772
LZQR01000417
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
4661
4737
+
Pro
GGG
[ENA]
¢þ
>WENV170831754
MDSZ01049758
[MDSZ] marine metagenome; seawater
18110
18034
-
Pro
GGG
[ENA]
¢þ
>WENV170889996
MDTD01003482
[MDTD] marine metagenome; seawater
37859
37783
-
Pro
GGG
[ENA]
¢þ
>WENV170891281
MDTD01021887
[MDTD] marine metagenome; seawater
15642
15718
+
Pro
GGG
[ENA]
¢þ
>WENV170928196
MDTG01129622
[MDTG] marine metagenome; seawater
93736
93812
+
Pro
GGG
[ENA]
¢þ
>WENV170933065
MDTG01214691
[MDTG] marine metagenome; seawater
52857
52781
-
Pro
GGG
[ENA]
¢þ
>WENV170962859
MRWF01028584
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
344502
344426
-
Pro
GGG
[ENA]
¢þ
>WENV170963776
MRWG01000730
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
68858
68782
-
Pro
GGG
[ENA]
¢þ
>C181067754
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
531508
531432
-
Pro
GGG
-
¡û
>C191188403
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
4672915
4672991
+
Pro
GGG
-
¡û
>W09118288
ACCU01000019
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
11425
11349
-
Pro
GGG
[ENA]
¡û
>W1910285126
FREW01000001
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
558348
558424
+
Pro
GGG
[ENA]
¡û
>W1910501828
FYAU01000036
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
100994
101070
+
Pro
GGG
[ENA]
¡û
>W1910501857
FYAV01000047
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
99043
99119
+
Pro
GGG
[ENA]
¡û
>W1910501903
FYAW01000017
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
302766
302690
-
Pro
GGG
[ENA]
¡û
>W1910989677
NKQT01000002
Alphaproteobacteria
Pseudovibrio exalbescens COD 22 [NKQT]
923650
923726
+
Pro
GGG
[ENA]
¡û
>W1911494878
OBML01000004
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
298997
299073
+
Pro
GGG
[ENA]
¡û
>W1911532399
OGUZ01000014
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
19289
19213
-
Pro
GGG
[ENA]
¡û
>W1810232558
PPCN01000011
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
181178
181254
+
Pro
GGG
[ENA]
¡û
>W1810324324
PUDR01000003
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
256438
256362
-
Pro
GGG
[ENA]
¡û
>W1810532648
QCYM01000001
Alphaproteobacteria
Labrenzia sp. 011 [QCYM]
59535
59459
-
Pro
GGG
[ENA]
¡û
>C11117284
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
2026649
2026573
-
Pro
GGG
[Ensembl]
¡û
>W11135877
AEFL01000075
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
115151
115227
+
Pro
GGG
[ENA]
¡û
>C161037925
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
3879637
3879713
+
Pro
GGG
-
¡û
>W1610091997
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
70959
70883
-
Pro
GGG
[ENA]
¡û
>W1610092079
CXTY01000014
Alphaproteobacteria
Roseibium album alba [CXTY]
555242
555318
+
Pro
GGG
[ENA]
¡û
>W1610092135
CXWA01000008
Alphaproteobacteria
Roseibium album alba [CXWA]
305154
305230
+
Pro
GGG
[ENA]
¡û
>W1610092182
CXWC01000012
Alphaproteobacteria
Roseibium album alba [CXWC]
68064
67988
-
Pro
GGG
[ENA]
¡û
>W1610092208
CXWD01000004
Alphaproteobacteria
Roseibium alexandrii [CXWD]
83564
83640
+
Pro
GGG
[ENA]
¡û
>W1610092265
CXWE01000006
Alphaproteobacteria
Roseibium album alba [CXWE]
511608
511684
+
Pro
GGG
[ENA]
¡û
>W1610540315
JSEP01000032
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
11825
11749
-
Pro
GGG
[ENA]
¡û
>W1610716036
LLWC01000024
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
147119
147043
-
Pro
GGG
[ENA]
¡û
>W1610716109
LLWE01000039
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
9569
9493
-
Pro
GGG
[ENA]
¡û
>W1610721791
LMCD01000020
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
388379
388455
+
Pro
GGG
[ENA]
¡û
>W1610721981
LMCG01000072
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
52471
52547
+
Pro
GGG
[ENA]
¡û
>W1611066209
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
115616
115540
-
Pro
GGG
[ENA]
¡û
>W1611066255
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
115967
115891
-
Pro
GGG
[ENA]
¡û
>W1710095354
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
70959
70883
-
Pro
GGG
[ENA]
¡û
>W1710095436
CXTY01000014
Alphaproteobacteria
Roseibium album alba [CXTY]
555242
555318
+
Pro
GGG
[ENA]
¡û
>W1710095492
CXWA01000008
Alphaproteobacteria
Roseibium album alba [CXWA]
305154
305230
+
Pro
GGG
[ENA]
¡û
>W1710095539
CXWC01000012
Alphaproteobacteria
Roseibium album alba [CXWC]
68064
67988
-
Pro
GGG
[ENA]
¡û
>W1710095565
CXWD01000004
Alphaproteobacteria
Roseibium alexandrii [CXWD]
83564
83640
+
Pro
GGG
[ENA]
¡û
>W1710095622
CXWE01000006
Alphaproteobacteria
Roseibium album alba [CXWE]
511608
511684
+
Pro
GGG
[ENA]
¡û
>W1710591630
FRBW01000001
Alphaproteobacteria
Roseibium suaedae [FRBW]
1451881
1451805
-
Pro
GGG
[ENA]
¡û
>W1710643336
JSEP01000032
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
11825
11749
-
Pro
GGG
[ENA]
¡û
>W1710660250
JXMT01000004
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
49732
49656
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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