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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178817 (35 seq.)
>A171003476
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1477839
1477912
+
Thr
TGT
-
¡û
>A171006925
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3321038
3321111
+
Thr
TGT
-
¡û
>A171007163
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2391886
2391813
-
Thr
TGT
-
¡û
>A172000025
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2487117
2487044
-
Thr
TGT
-
¡û
>A172000026
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1605788
1605861
+
Thr
TGT
-
¡û
>A172000030
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2856371
2856444
+
Thr
TGT
-
¡û
>WENV170008684
APHM01001208
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
53
126
+
Thr
TGT
[ENA]
¢þ
>WENV170008688
APHM01001567
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
265
338
+
Thr
TGT
[ENA]
¢þ
>WENV170008991
APHM01018375
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
324
251
-
Thr
TGT
[ENA]
¢þ
>At0880
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2261807
2261734
-
Thr
TGT
[Ensembl]
¡û
>W1910228436
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
89491
89417
-
Thr
TGT
[ENA]
¡û
>W1910228503
FNQT01000001
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
400769
400842
+
Thr
TGT
[ENA]
¡û
>W1910229799
FOFD01000002
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
417258
417331
+
Thr
TGT
[ENA]
¡û
>W1910229934
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
238516
238589
+
Thr
TGT
[ENA]
¡û
>W1910230243
FOKW01000003
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
239448
239375
-
Thr
TGT
[ENA]
¡û
>W1910575900
JROF01000046
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
15552
15479
-
Thr
TGT
[ENA]
¡û
>W1910657570
MASN01000035
Euryarchaeota
Natrialba sp. SSL1 [MASN]
92450
92523
+
Thr
TGT
[ENA]
¡û
>W1911433975
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1702454
1702527
+
Thr
TGT
[ENA]
¡û
>W1911709643
QPLR01000002
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
243066
242992
-
Thr
TGT
[ENA]
¡û
>W1911769984
QXIJ01000004
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
333690
333764
+
Thr
TGT
[ENA]
¡û
>W1610004070
AGFZ01000116
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
55971
56044
+
Thr
TGT
[ENA]
¡û
>W1610012133
AOIB01000021
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
120985
120912
-
Thr
TGT
[ENA]
¡û
>W1610012493
AOIM01000041
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
329107
329034
-
Thr
TGT
[ENA]
¡û
>W1610012586
AOIP01000009
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
89923
89850
-
Thr
TGT
[ENA]
¡û
>W1610014434
AOLZ01000056
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
56060
56133
+
Thr
TGT
[ENA]
¡û
>W1610019102
ARPX01000198
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
262
189
-
Thr
TGT
[ENA]
¡û
>W1620000015
AJVG01000014
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
73155
73228
+
Thr
TGT
[ENA]
¡û
>W1620000040
AOII01000089
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
40735
40662
-
Thr
TGT
[ENA]
¡û
>W1620000041
AOIJ01000086
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
62205
62278
+
Thr
TGT
[ENA]
¡û
>W1620000043
AOIL01000067
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
302065
301992
-
Thr
TGT
[ENA]
¡û
>W1620000044
AOIO01000030
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
13657
13584
-
Thr
TGT
[ENA]
¡û
>W1620000045
AOIQ01000003
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
40664
40591
-
Thr
TGT
[ENA]
¡û
>W1620000068
AOMA01000183
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
1670
1597
-
Thr
TGT
[ENA]
¡û
>W1620000074
ARPZ01000112
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
4035
3961
-
Thr
TGT
[ENA]
¡û
>W1620000235
CBMA010000035
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
62572
62499
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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