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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178830 (85 seq.)
>W1710793924
LJPT01000047
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. antirrhini [LJPT]
30942
31018
+
Met
CAT
[ENA]
¡û
>W1710794920
LJQP01000063
Gammaproteobacteria
Pseudomonas amygdali pv. lachrymans [LJQP]
7452
7376
-
Met
CAT
[ENA]
¡û
>W1710794944
LJQQ01000014
Gammaproteobacteria
Pseudomonas syringae pv. lapsa [LJQQ]
30836
30912
+
Met
CAT
[ENA]
¡û
>W1710795181
LJQV01000225
Gammaproteobacteria
Pseudomonas amygdali pv. myricae [LJQV]
47376
47452
+
Met
CAT
[ENA]
¡û
>W1710795223
LJQW01000151
Gammaproteobacteria
Pseudomonas savastanoi pv. nerii [LJQW]
51467
51543
+
Met
CAT
[ENA]
¡û
>W1710795439
LJRA01000251
Gammaproteobacteria
Pseudomonas coronafaciens pv. porri [LJRA]
52359
52283
-
Met
CAT
[ENA]
¡û
>W1710795524
LJRC01000186
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. primulae [LJRC]
38883
38959
+
Met
CAT
[ENA]
¡û
>W1710835019
LLJL01000454
Gammaproteobacteria
Pseudomonas savastanoi pv. fraxini [LLJL]
1393
1317
-
Met
CAT
[ENA]
¡û
>W1710892273
LNDO01000118
Gammaproteobacteria
Pseudomonas sp. Ga0074129 [LNDO]
4257
4181
-
Met
CAT
[ENA]
¡û
>W1710901372
LNKY01000126
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. tomato [LNKY]
75168
75244
+
Met
CAT
[ENA]
¡û
>W1711726748
MTSB01000010
Gammaproteobacteria
Pseudomonas graminis [MTSB]
39300
39376
+
Met
CAT
[ENA]
¡û
>W131044368
AMQP01000176
Gammaproteobacteria
Pseudomonas viridiflava UASWS0038 [AMQP]
16982
16906
-
Met
CAT
[ENA]
¡û
>W131061857
ANJF01000130
Gammaproteobacteria
Pseudomonas syringae ICMP 18806 [ANJF]
26617
26693
+
Met
CAT
[ENA]
¡û
>W131092888
AOKA01000331
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae ICMP 19102 [AOKA]
1495
1419
-
Met
CAT
[ENA]
¡û
>W131093153
AOKG01000242
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae ICMP 18807 [AOKG]
5450
5526
+
Met
CAT
[ENA]
¡û
>W131093346
AOKJ01000356
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae ICMP 19094 [AOKJ]
2869
2793
-
Met
CAT
[ENA]
¡û
>C171075250
CP018202
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae ICMP 9853 [CP018202]
410002
409926
-
Met
CAT
-
¡û
>W141092200
AUZR02000200
Gammaproteobacteria
Pseudomonas syringae pv. pisi str. PP1 [AUZR]
30986
31062
+
Met
CAT
[ENA]
¡û
>W141095581
AVEK02000218
Gammaproteobacteria
Pseudomonas syringae CC1524 [AVEK] CC1524 [AVEK]
12266
12190
-
Met
CAT
[ENA]
¡û
>W141095721
AVEN02000300
Gammaproteobacteria
Pseudomonas syringae CC1458 [AVEN]
30828
30904
+
Met
CAT
[ENA]
¡û
>WENV170700284
LIDZ01010394
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
4065
4141
+
Met
CAT
[ENA]
¢þ
>WENV170711077
LNFM01003450
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
39069
39145
+
Met
CAT
[ENA]
¢þ
>WENV170934073
MDTG01232015
[MDTG] marine metagenome; seawater
5594
5670
+
Met
CAT
[ENA]
¢þ
>C181134738
CP026568
Gammaproteobacteria
Pseudomonas syringae pv. syringae Pss9097 [CP026568]
5375392
5375468
+
Met
CAT
-
¡û
>C181229823
LT985192
Gammaproteobacteria
Pseudomonas syringae CFBP 2116 [LT985192]
5446082
5446158
+
Met
CAT
-
¡û
>W09124448
ACHU01000059
Gammaproteobacteria
Pseudomonas amygdali pv. tabaci ATCC 11528 [ACHU]
166362
166286
-
Met
CAT
[ENA]
¡û
>W1910620762
LKCB01000101
Gammaproteobacteria
Pseudomonas syringae pv. cerasicola ICMP 13929 [LKCB]
58543
58619
+
Met
CAT
[ENA]
¡û
>W1910743841
MHZN01000044
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 [MHZN]
7568
7492
-
Met
CAT
[ENA]
¡û
>W1910757036
MLEE01000022
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R19646 [MLEE]
881
805
-
Met
CAT
[ENA]
¡û
>W1910757377
MLEM01000010
Gammaproteobacteria
Pseudomonas syringae pv. syringae Pss9656 [MLEM]
75468
75544
+
Met
CAT
[ENA]
¡û
>W1910758162
MLFM01000009
Gammaproteobacteria
Pseudomonas syringae 260-02 [MLFM]
75288
75364
+
Met
CAT
[ENA]
¡û
>W1910809919
MUHO01000039
Gammaproteobacteria
Pseudomonas syringae 13-C2 [MUHO]
10444
10368
-
Met
CAT
[ENA]
¡û
>W1910811354
MVAV01000035
Gammaproteobacteria
Pseudomonas syringae BS2121 [MVAV]
75485
75561
+
Met
CAT
[ENA]
¡û
>W1910811656
MVBA01000099
Gammaproteobacteria
Pseudomonas syringae ZUM3584 [MVBA]
5579
5503
-
Met
CAT
[ENA]
¡û
>W1910855334
NBLF01000003
Gammaproteobacteria
Pseudomonas amygdali pv. lachrymans 814/98 [NBLF]
580408
580332
-
Met
CAT
[ENA]
¡û
>W1910914198
NHSU01000031
Gammaproteobacteria
Pseudomonas syringae LP868.1a [NHSU]
94970
94894
-
Met
CAT
[ENA]
¡û
>W1910914492
NHTC01000020
Gammaproteobacteria
Pseudomonas syringae LMC.P80 [NHTC]
5891
5815
-
Met
CAT
[ENA]
¡û
>W1810475685
QAJE01000126
Gammaproteobacteria
Pseudomonas sp. HMWF010 [QAJE]
20087
20011
-
Met
CAT
[ENA]
¡û
>W1810753630
QPCH01000008
Gammaproteobacteria
Pseudomonas cichorii 136 [QPCH]
74525
74601
+
Met
CAT
[ENA]
¡û
>W1810753695
QPCI01000006
Gammaproteobacteria
Pseudomonas cichorii REF [QPCI]
47627
47703
+
Met
CAT
[ENA]
¡û
>W1810754008
QPCO01000034
Gammaproteobacteria
Pseudomonas coronafaciens pv. garcae 436 [QPCO]
73959
74035
+
Met
CAT
[ENA]
¡û
>W1810754104
QPCR01000005
Gammaproteobacteria
Pseudomonas amygdali pv. tabaci 440 [QPCR]
35247
35171
-
Met
CAT
[ENA]
¡û
>W1810754741
QPDG01000008
Gammaproteobacteria
Pseudomonas coronafaciens pv. garcae 459 [QPDG]
10512
10436
-
Met
CAT
[ENA]
¡û
>W1810755229
QPDR01000021
Gammaproteobacteria
Pseudomonas coronafaciens pv. garcae 471 [QPDR]
96801
96725
-
Met
CAT
[ENA]
¡û
>W1810755313
QPDT01000012
Gammaproteobacteria
Pseudomonas cichorii 474 [QPDT]
48011
47935
-
Met
CAT
[ENA]
¡û
>W1810755836
QPEF01000009
Gammaproteobacteria
Pseudomonas coronafaciens pv. garcae 486 [QPEF]
73959
74035
+
Met
CAT
[ENA]
¡û
>C151007685
CP005970
Gammaproteobacteria
Pseudomonas syringae UMAF0158 [CP005970]
3173230
3173306
+
Met
CAT
-
¡û
>C151008878
CP006256
Gammaproteobacteria
Pseudomonas syringae pv. syringae HS191 [CP006256]
5365123
5365199
+
Met
CAT
[Ensembl]
¡û
>W10123551
AEAE01000393
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum str. M302280PT [AEAE]
10246
10322
+
Met
CAT
[ENA]
¡û
>W10123822
AEAK01000397
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola str. ES4326 [AEAK]
3264
3340
+
Met
CAT
[ENA]
¡û
>W11130349
AEAE01000393
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum str. M302280PT [AEAE]
10246
10322
+
Met
CAT
[ENA]
¡û
>W11130620
AEAK01000397
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola str. ES4326 [AEAK]
3264
3340
+
Met
CAT
[ENA]
¡û
>W121005820
AFTH01000109
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae str. NCPPB 3739 [AFTH]
2741
2817
+
Met
CAT
[ENA]
¡û
>W121011899
AGNQ01000356
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae PA459 [AGNQ]
2786
2862
+
Met
CAT
[ENA]
¡û
>W1610615814
LGLD01000029
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLD]
233726
233650
-
Met
CAT
[ENA]
¡û
>W1610615943
LGLH01000040
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLH]
21140
21064
-
Met
CAT
[ENA]
¡û
>W1610616318
LGLQ01000354
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LGLQ]
1890
1814
-
Met
CAT
[ENA]
¡û
>W1610630009
LIIA01000135
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LIIA]
45164
45240
+
Met
CAT
[ENA]
¡û
>W1610630207
LIIE01000080
Gammaproteobacteria
Pseudomonas amygdali pv. dendropanacis [LIIE]
2349
2273
-
Met
CAT
[ENA]
¡û
>W1610630429
LIII01000171
Gammaproteobacteria
Pseudomonas syringae pv. broussonetiae [LIII]
1524
1448
-
Met
CAT
[ENA]
¡û
>W1610659180
LJQW01000151
Gammaproteobacteria
Pseudomonas savastanoi pv. nerii [LJQW]
51467
51543
+
Met
CAT
[ENA]
¡û
>W1610659396
LJRA01000251
Gammaproteobacteria
Pseudomonas coronafaciens pv. porri [LJRA]
52359
52283
-
Met
CAT
[ENA]
¡û
>W1610698158
LLJL01000454
Gammaproteobacteria
Pseudomonas savastanoi pv. fraxini [LLJL]
1393
1317
-
Met
CAT
[ENA]
¡û
>W1610752539
LNDO01000118
Gammaproteobacteria
Pseudomonas sp. Ga0074129 [LNDO]
4257
4181
-
Met
CAT
[ENA]
¡û
>W1610760627
LNKY01000126
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. tomato [LNKY]
75168
75244
+
Met
CAT
[ENA]
¡û
>W1630011943
LJQD01000219
Gammaproteobacteria
Pseudomonas syringae pv. castaneae [LJQD]
3197
3270
+
Met
CAT
[ENA]
¡û
>W1730014384
LJQD01000219
Gammaproteobacteria
Pseudomonas syringae pv. castaneae [LJQD]
3197
3270
+
Met
CAT
[ENA]
¡û
>W1710505139
FMTL01000007
Gammaproteobacteria
Pseudomonas peli [FMTL]
7687
7611
-
Met
CAT
[ENA]
¡û
>W1710522770
FNHM01000005
Gammaproteobacteria
Pseudomonas syringae [FNHM]
438719
438643
-
Met
CAT
[ENA]
¡û
>W1710523189
FNHT01000010
Gammaproteobacteria
Pseudomonas sp. BS3759 [FNHT]
234887
234811
-
Met
CAT
[ENA]
¡û
>W1710524032
FNIK01000004
Gammaproteobacteria
Pseudomonas cichorii [FNIK]
74975
75051
+
Met
CAT
[ENA]
¡û
>W1710531520
FNPP01000004
Gammaproteobacteria
Pseudomonas syringae [FNPP]
304609
304533
-
Met
CAT
[ENA]
¡û
>W1710563453
FOPR01000011
Gammaproteobacteria
Pseudomonas syringae [FOPR]
73532
73608
+
Met
CAT
[ENA]
¡û
>W1710564397
FOQL01000005
Gammaproteobacteria
Pseudomonas guineae [FOQL]
46853
46777
-
Met
CAT
[ENA]
¡û
>W1710568683
FOTU01000003
Gammaproteobacteria
Pseudomonas syringae [FOTU]
75059
75135
+
Met
CAT
[ENA]
¡û
>W1710577847
FPBC01000018
Gammaproteobacteria
Pseudomonas marincola [FPBC]
51545
51621
+
Met
CAT
[ENA]
¡û
>W1710593160
FRDA01000006
Gammaproteobacteria
Pseudomonas asturiensis [FRDA]
57130
57206
+
Met
CAT
[ENA]
¡û
>W1710737060
LGLD01000029
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLD]
233726
233650
-
Met
CAT
[ENA]
¡û
>W1710737189
LGLH01000040
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLH]
21140
21064
-
Met
CAT
[ENA]
¡û
>W1710737564
LGLQ01000354
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LGLQ]
1890
1814
-
Met
CAT
[ENA]
¡û
>W1710761006
LIHY01000056
Gammaproteobacteria
Pseudomonas amygdali pv. myricae [LIHY]
1007
931
-
Met
CAT
[ENA]
¡û
>W1710761148
LIIA01000135
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LIIA]
45164
45240
+
Met
CAT
[ENA]
¡û
>W1710761287
LIID01000038
Gammaproteobacteria
Pseudomonas amygdali pv. eriobotryae [LIID]
14698
14622
-
Met
CAT
[ENA]
¡û
>W1710761346
LIIE01000080
Gammaproteobacteria
Pseudomonas amygdali pv. dendropanacis [LIIE]
2349
2273
-
Met
CAT
[ENA]
¡û
>W1710761568
LIII01000171
Gammaproteobacteria
Pseudomonas syringae pv. broussonetiae [LIII]
1524
1448
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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