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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178852 (24 seq.)
>W1711170186
LWAF01000001
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
278195
278119
-
Met
CAT
[ENA]
¡û
>W131193866
ASPL01000004
Thermotogota
Thermotogota bacterium JGI 0000106-O11 JGI 0000106-O11 [ASPL]
2754
2830
+
Met
CAT
[ENA]
¡û
>C025666
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1362288
1362212
-
Met
CAT
-
¡û
>w019736
AAUK01000009
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
10431
10509
+
Met
CAT
[ENA]
¡û
>WENV180014034
FPIC01033005
[FPIC] soil metagenome; Soil
80
4
-
fMet
CAT
[ENA]
¢þ
>WENV180095983
MTBK01100539
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
4387
4311
-
fMet
CAT
[ENA]
¢þ
>WENV181226138
OFDK01000086
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2820
2744
-
fMet
CAT
[ENA]
¢þ
>WENV181285325
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
170233
170157
-
fMet
CAT
[ENA]
¢þ
>C08004983
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1049920
1049996
+
Met
CAT
[Ensembl]
¡û
>C08010899
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1494422
1494498
+
Met
CAT
[Ensembl]
¡û
>WENV170676511
LDZS01000383
[LDZS] terrestrial metagenome; oil reservoir sample K3
5018
4942
-
Met
CAT
[ENA]
¢þ
>WENV170676777
LDZS01002320
[LDZS] terrestrial metagenome; oil reservoir sample K3
11
87
+
Met
CAT
[ENA]
¢þ
>WENV170676778
LDZS01002322
[LDZS] terrestrial metagenome; oil reservoir sample K3
2130
2206
+
Met
CAT
[ENA]
¢þ
>W09106547
AAWB01000003
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
52666
52742
+
Met
CAT
[ENA]
¡û
>W1910573572
JPMH01000013
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
29225
29149
-
Met
CAT
[ENA]
¡û
>W1511355450
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1615644
1615568
-
Met
CAT
[ENA]
¡û
>C121009909
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1338266
1338190
-
Met
CAT
[Ensembl]
¡û
>C161034988
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1964189
1964113
-
Met
CAT
[Ensembl]
¡û
>C161071296
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1366728
1366652
-
Met
CAT
[Ensembl]
¡û
>W121010820
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
267819
267895
+
Met
CAT
[ENA]
¡û
>W1610540333
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
14079
14155
+
Met
CAT
[ENA]
¡û
>W1710517610
FNDL01000021
Thermotogota
Fervidobacterium changbaicum [FNDL]
27728
27652
-
Met
CAT
[ENA]
¡û
>W1710593353
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
200118
200042
-
Met
CAT
[ENA]
¡û
>W1710643354
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
14079
14155
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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