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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178889 (27 seq.)
>A171001136
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3689684
3689758
+
Lys
TTT
-
¡û
>A171002464
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2732973
2732899
-
Lys
TTT
-
¡û
>A171003079
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
232728
232654
-
Lys
TTT
-
¡û
>A171004145
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2550146
2550219
+
Lys
TTT
-
¡û
>A171004200
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
200738
200664
-
Lys
TTT
-
¡û
>WENV170679710
LFCJ01000179
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
15042
14968
-
Lys
TTT
[ENA]
¢þ
>W1910226681
FMZP01000003
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
1233
1159
-
Lys
TTT
[ENA]
¡û
>W1910226866
FNFC01000004
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
2620
2547
-
Lys
TTT
[ENA]
¡û
>W1910230865
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
42665
42592
-
Lys
TTT
[ENA]
¡û
>W1910568529
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
534
460
-
Lys
TTT
[ENA]
¡û
>W1910569081
JHUT02000009
Euryarchaeota
Natrinema mahii H13 [JHUT]
135352
135426
+
Lys
TTT
[ENA]
¡û
>W1910572558
JMIP02000014
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
419723
419650
-
Lys
TTT
[ENA]
¡û
>W1910646149
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
15782
15708
-
Lys
TTT
[ENA]
¡û
>W1911572235
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1806813
1806739
-
Lys
TTT
[ENA]
¡û
>W1911717978
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
1251065
1250991
-
Lys
TTT
[ENA]
¡û
>W1610001052
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
86587
86513
-
Lys
TTT
[ENA]
¡û
>W1610004034
AGFZ01000001
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
24758
24832
+
Lys
TTT
[ENA]
¡û
>W1610004128
AGIN01000004
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
2876
2802
-
Lys
TTT
[ENA]
¡û
>W1610004163
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
310902
310978
+
Lys
TTT
[ENA]
¡û
>W1610012068
AOIA01000026
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
19586
19660
+
Lys
TTT
[ENA]
¡û
>W1610012110
AOIB01000010
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
25114
25188
+
Lys
TTT
[ENA]
¡û
>W1610012201
AOID01000021
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
2314
2238
-
Lys
TTT
[ENA]
¡û
>W1610012243
AOIE01000032
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
17009
17083
+
Lys
TTT
[ENA]
¡û
>W1610012662
AOIR01000005
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
200124
200198
+
Lys
TTT
[ENA]
¡û
>W1610012722
AOIS01000022
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
45197
45123
-
Lys
TTT
[ENA]
¡û
>W1610014472
AOMA01000147
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
1292
1366
+
Lys
TTT
[ENA]
¡û
>W1610083025
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
1088716
1088643
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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