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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178891 (73 seq.)
>A171001114
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
512194
512267
+
Ile
GAT
-
¡û
>A171001301
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2932592
2932665
+
Ile
GAT
-
¡û
>A171002702
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1241694
1241767
+
Ile
GAT
-
¡û
>A171003058
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3415103
3415176
+
Ile
GAT
-
¡û
>A171003150
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
102970
103043
+
Ile
GAT
-
¡û
>A171003469
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
328406
328480
+
Ile
GAT
-
¡û
>A171004160
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
160809
160736
-
Ile
GAT
-
¡û
>A171006978
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2412227
2412154
-
Ile
GAT
-
¡û
>WENV170680071
LFCJ01003581
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3820
3893
+
Ile
GAT
[ENA]
¢þ
>WENV170680215
LFCJ01005996
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8768
8841
+
Ile
GAT
[ENA]
¢þ
>WENV170680392
LFCJ01010398
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6421
6494
+
Ile
GAT
[ENA]
¢þ
>WENV170681104
LFFM01000062
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
36365
36439
+
Ile
GAT
[ENA]
¢þ
>WENV170681291
LFFM01000391
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
36
110
+
Ile
GAT
[ENA]
¢þ
>WENV170681299
LFFM01000426
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10309
10236
-
Ile
GAT
[ENA]
¢þ
>WENV170681711
LFFM01002239
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
54
127
+
Ile
GAT
[ENA]
¢þ
>WENV170681784
LFFM01002733
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11402
11475
+
Ile
GAT
[ENA]
¢þ
>WENV170702417
LKMJ01001836
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4588
4662
+
Ile
GAT
[ENA]
¢þ
>WENV170702439
LKMJ01001947
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3422
3349
-
Ile
GAT
[ENA]
¢þ
>WENV170703600
LKMJ01014438
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7066
7139
+
Ile
GAT
[ENA]
¢þ
>WENV170703748
LKMJ01016318
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3756
3682
-
Ile
GAT
[ENA]
¢þ
>WENV170704033
LKMJ01021077
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
205
132
-
Ile
GAT
[ENA]
¢þ
>W1910226704
FMZP01000011
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
17057
16983
-
Ile
GAT
[ENA]
¡û
>W1910226924
FNFE01000004
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
447644
447717
+
Ile
GAT
[ENA]
¡û
>W1910229340
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
238619
238693
+
Ile
GAT
[ENA]
¡û
>W1910229810
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
703195
703122
-
Ile
GAT
[ENA]
¡û
>W1910229909
FOIC01000008
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
17057
16983
-
Ile
GAT
[ENA]
¡û
>W1910229954
FOIS01000004
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
239420
239494
+
Ile
GAT
[ENA]
¡û
>W1910230842
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
401229
401156
-
Ile
GAT
[ENA]
¡û
>W1910340500
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
823450
823377
-
Ile
GAT
[ENA]
¡û
>W1910340553
FTNR01000010
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
38554
38627
+
Ile
GAT
[ENA]
¡û
>W1910568503
JDTG01000010
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
175486
175413
-
Ile
GAT
[ENA]
¡û
>W1910569068
JHUT02000003
Euryarchaeota
Natrinema mahii H13 [JHUT]
307856
307783
-
Ile
GAT
[ENA]
¡û
>W1910572576
JMIP02000020
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
236247
236321
+
Ile
GAT
[ENA]
¡û
>W1910572726
JNCS01000010
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
64968
65041
+
Ile
GAT
[ENA]
¡û
>W1910575901
JROF01000052
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
7163
7089
-
Ile
GAT
[ENA]
¡û
>W1910583008
JXAN01000029
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
13016
13089
+
Ile
GAT
[ENA]
¡û
>W1910646123
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2877879
2877953
+
Ile
GAT
[ENA]
¡û
>W1910657566
MASN01000030
Euryarchaeota
Natrialba sp. SSL1 [MASN]
267975
267902
-
Ile
GAT
[ENA]
¡û
>W1910826112
MWPH01000003
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
665940
666014
+
Ile
GAT
[ENA]
¡û
>W1911433989
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3292708
3292635
-
Ile
GAT
[ENA]
¡û
>W1911572210
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1148811
1148884
+
Ile
GAT
[ENA]
¡û
>W1911709991
QPND01000011
Euryarchaeota
Saliphagus sp. LR7 [QPND]
123641
123568
-
Ile
GAT
[ENA]
¡û
>W1911718005
QQTY01000004
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
2763
2690
-
Ile
GAT
[ENA]
¡û
>W1610001034
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
1066777
1066850
+
Ile
GAT
[ENA]
¡û
>W1610004156
AGIN01000016
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
47427
47354
-
Ile
GAT
[ENA]
¡û
>W1610005351
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
6779
6852
+
Ile
GAT
[ENA]
¡û
>W1610011714
AOHS01000024
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
96710
96637
-
Ile
GAT
[ENA]
¡û
>W1610011891
AOHW01000002
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
60943
61016
+
Ile
GAT
[ENA]
¡û
>W1610011941
AOHX01000026
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
442970
442896
-
Ile
GAT
[ENA]
¡û
>W1610011988
AOHY01000009
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
12749
12676
-
Ile
GAT
[ENA]
¡û
>W1610012040
AOHZ01000043
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
750
676
-
Ile
GAT
[ENA]
¡û
>W1610012104
AOIA01000167
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
87065
86992
-
Ile
GAT
[ENA]
¡û
>W1610012122
AOIB01000014
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
120600
120526
-
Ile
GAT
[ENA]
¡û
>W1610012220
AOID01000048
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
139958
139885
-
Ile
GAT
[ENA]
¡û
>W1610012265
AOIE01000102
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
72472
72545
+
Ile
GAT
[ENA]
¡û
>W1610012282
AOII01000019
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
22944
23017
+
Ile
GAT
[ENA]
¡û
>W1610012356
AOIJ01000057
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
23574
23501
-
Ile
GAT
[ENA]
¡û
>W1610012405
AOIK01000037
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
23769
23696
-
Ile
GAT
[ENA]
¡û
>W1610012440
AOIL01000049
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
104544
104617
+
Ile
GAT
[ENA]
¡û
>W1610012478
AOIM01000035
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
292029
292103
+
Ile
GAT
[ENA]
¡û
>W1610012536
AOIN01000100
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
113460
113386
-
Ile
GAT
[ENA]
¡û
>W1610012568
AOIO01000035
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
18246
18173
-
Ile
GAT
[ENA]
¡û
>W1610012595
AOIP01000015
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
473435
473362
-
Ile
GAT
[ENA]
¡û
>W1610012630
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
310469
310393
-
Ile
GAT
[ENA]
¡û
>W1610012684
AOIR01000053
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
152462
152389
-
Ile
GAT
[ENA]
¡û
>W1610012715
AOIS01000011
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
1112
1039
-
Ile
GAT
[ENA]
¡û
>W1610012758
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
69522
69448
-
Ile
GAT
[ENA]
¡û
>W1610019017
ARPH01000004
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
602867
602940
+
Ile
GAT
[ENA]
¡û
>W1610046873
BBCV01000092
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
4145
4219
+
Ile
GAT
[ENA]
¡û
>W1610082982
CBMA010000025
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
226718
226644
-
Ile
GAT
[ENA]
¡û
>W1610671372
LKCV01000058
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
14835
14909
+
Ile
GAT
[ENA]
¡û
>W1610682561
LKND01000006
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
36365
36439
+
Ile
GAT
[ENA]
¡û
>W1610682645
LKNG01000006
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
10309
10236
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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