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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178897 (39 seq.)
>A171000774
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
1865887
1865960
+
Thr
CGT
-
¡û
>A171002638
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1909928
1909855
-
Thr
CGT
-
¡û
>A171003971
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1921361
1921288
-
Thr
CGT
-
¡û
>A171005828
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
512670
512596
-
Thr
CGT
-
¡û
>A171006863
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2773436
2773509
+
Thr
CGT
-
¡û
>A171006991
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
391448
391521
+
Thr
CGT
-
¡û
>WENV180318571
OBKM01002166
[OBKM] metagenome; water
116
43
-
Thr
CGT
[ENA]
¢þ
>At0778
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1247215
1247142
-
Thr
CGT
[Ensembl]
¡û
>WENV170679790
LFCJ01000492
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
16369
16442
+
Thr
CGT
[ENA]
¢þ
>WENV170680057
LFCJ01003248
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5896
5970
+
Thr
CGT
[ENA]
¢þ
>WENV170680311
LFCJ01007924
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1360
1433
+
Thr
CGT
[ENA]
¢þ
>WENV170702250
LKMJ01001070
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
23204
23277
+
Thr
CGT
[ENA]
¢þ
>WENV170703264
LKMJ01008633
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1099
1175
+
Thr
CGT
[ENA]
¢þ
>WENV170703602
LKMJ01014452
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6567
6641
+
Thr
CGT
[ENA]
¢þ
>W1910175115
BIXZ01000004
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
162848
162921
+
Thr
CGT
[ENA]
¡û
>W1910226672
FMZP01000001
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
305394
305321
-
Thr
CGT
[ENA]
¡û
>W1910229710
FOCX01000022
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
50642
50715
+
Thr
CGT
[ENA]
¡û
>W1910568549
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
929898
929972
+
Thr
CGT
[ENA]
¡û
>W1910583046
JXAO01000009
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
12234
12308
+
Thr
CGT
[ENA]
¡û
>W1910617609
LIUF01000005
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
167717
167790
+
Thr
CGT
[ENA]
¡û
>W1911709459
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
88562
88489
-
Thr
CGT
[ENA]
¡û
>W1911709596
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
88726
88653
-
Thr
CGT
[ENA]
¡û
>W1911709972
QPND01000006
Euryarchaeota
Saliphagus sp. LR7 [QPND]
217672
217745
+
Thr
CGT
[ENA]
¡û
>W1911717981
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
530309
530236
-
Thr
CGT
[ENA]
¡û
>W1911770049
QXIK01000010
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
68800
68873
+
Thr
CGT
[ENA]
¡û
>W1610000812
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1860829
1860756
-
Thr
CGT
[ENA]
¡û
>W1610001049
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
802662
802735
+
Thr
CGT
[ENA]
¡û
>W1610004052
AGFZ01000055
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
6001
5928
-
Thr
CGT
[ENA]
¡û
>W1610012084
AOIA01000116
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
56425
56352
-
Thr
CGT
[ENA]
¡û
>W1610014165
AOLR01000002
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
82382
82309
-
Thr
CGT
[ENA]
¡û
>W1610014207
AOLS01000008
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
87301
87228
-
Thr
CGT
[ENA]
¡û
>W1610014290
AOLW01000050
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
107487
107560
+
Thr
CGT
[ENA]
¡û
>W1610014343
AOLX01000027
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
179533
179606
+
Thr
CGT
[ENA]
¡û
>W1610014378
AOLY01000009
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
261419
261492
+
Thr
CGT
[ENA]
¡û
>W1610014471
AOMA01000122
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
146
73
-
Thr
CGT
[ENA]
¡û
>W1610018991
AQZY01000012
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
69388
69461
+
Thr
CGT
[ENA]
¡û
>W1610061923
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1231020
1230946
-
Thr
CGT
[ENA]
¡û
>W1610061944
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1717298
1717371
+
Thr
CGT
[ENA]
¡û
>W1610881016
LRHL01000011
Euryarchaeota
Haloarcula sp. K1 [LRHL]
70650
70577
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK