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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178922 (43 seq.)
>W1711116401
LUAZ01000012
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
81023
81099
+
Leu
TAA
[ENA]
¡û
>W1711178101
LWGL01000096
Actinomycetota
Cellulosimicrobium cellulans [LWGL]
4524
4450
-
Leu
TAA
[ENA]
¡û
>W131242694
CAOI01000095
Actinomycetota
Cellulosimicrobium cellulans LMG 16121 [CAOI]
4045
3969
-
Leu
TAA
[ENA]
¡û
>W1711492300
MKKH01000002
Actinomycetota
Cellulosimicrobium sp. CUA-896 [MKKH]
66196
66122
-
Leu
TAA
[ENA]
¡û
>W1712001620
NEDO01000004
Actinomycetota
Cellulosimicrobium sp. KWT-B [NEDO]
366585
366509
-
Leu
TAA
[ENA]
¡û
>C171113697
CP020857
Actinomycetota
Cellulosimicrobium sp. TH-20 [CP020857]
1863618
1863694
+
Leu
TAA
-
¡û
>C171118591
CP021383
Actinomycetota
Cellulosimicrobium cellulans PSBB019 [CP021383]
705458
705384
-
Leu
TAA
-
¡û
>WENV180280300
OBHY01000003
[OBHY] human gut metagenome; Tissue from the tricuspid valve
340367
340291
-
Leu
TAA
[ENA]
¢þ
>WENV180280492
OBHZ01000009
[OBHZ] human gut metagenome; Vulva exsudate
95452
95528
+
Leu
TAA
[ENA]
¢þ
>WENV180289194
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
340342
340266
-
Leu
TAA
[ENA]
¢þ
>WENV180305048
OBJK01000004
[OBJK] human gut metagenome; Skin biopsy
340384
340308
-
Leu
TAA
[ENA]
¢þ
>WENV180305208
OBJL01000004
[OBJL] human gut metagenome; Skin biopsy
34366
34290
-
Leu
TAA
[ENA]
¢þ
>w001798
AAAP01000130
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
509
585
+
Leu
TAA
[ENA]
¡û
>W141279562
JAGJ01000029
Actinomycetota
Cellulosimicrobium cellulans J36 [JAGJ]
446
370
-
Leu
TAA
[ENA]
¡û
>WENV183635051
OOIR01000020
[OOIR] human gut metagenome; Skin biopsy
6989
6913
-
Leu
TAA
[ENA]
¢þ
>WENV183635130
OOIS01000007
[OOIS] human gut metagenome; Bone, muscular tissue, and connective tissue from the spine extension of third thoracic
276342
276418
+
Leu
TAA
[ENA]
¢þ
>WENV183635205
OOIT01000221
[OOIT] human gut metagenome; Lymphatic node biopsy
3723
3799
+
Leu
TAA
[ENA]
¢þ
>WENV183635276
OOIU01000008
[OOIU] human gut metagenome; Lymphatic node biopsy
276342
276418
+
Leu
TAA
[ENA]
¢þ
>WENV183635420
OOIV01000007
[OOIV] human gut metagenome; Biopsy of a nasal polyp
276342
276418
+
Leu
TAA
[ENA]
¢þ
>WENV183635601
OOIW01000012
[OOIW] human gut metagenome; Skin biopsy
276342
276418
+
Leu
TAA
[ENA]
¢þ
>WENV183635846
OOJA01000010
[OOJA] human gut metagenome; Lung tissue
6989
6913
-
Leu
TAA
[ENA]
¢þ
>WENV183636126
OOJR01000007
[OOJR] human gut metagenome; Lung tissue
6989
6913
-
Leu
TAA
[ENA]
¢þ
>WENV183636351
OOKD01000063
[OOKD] human gut metagenome; Skin biopsy
6989
6913
-
Leu
TAA
[ENA]
¢þ
>WENV183636610
OOKJ01000050
[OOKJ] human gut metagenome; Material from the bottom lip
16500
16576
+
Leu
TAA
[ENA]
¢þ
>WENV183636868
OOQC01000005
[OOQC] human gut metagenome; Biopsy from a wound at the foot
6989
6913
-
Leu
TAA
[ENA]
¢þ
>WENV183637104
OPGP01000008
[OPGP] human gut metagenome; Material from the ethmoid
276342
276418
+
Leu
TAA
[ENA]
¢þ
>WENV183741593
PJUG01000127
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
7785
7710
-
Leu
TAA
[ENA]
¢þ
>WENV183742759
PJUI01000124
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
7785
7710
-
Leu
TAA
[ENA]
¢þ
>W141808794
JPQW01000056
Actinomycetota
Cellulosimicrobium sp. MM [JPQW]
3923
3847
-
Leu
TAA
[ENA]
¡û
>W1910183756
BJNZ01000021
Actinomycetota
Cellulosimicrobium cellulans NBRC 15516 [BJNZ]
7636
7561
-
Leu
TAA
[ENA]
¡û
>W1810477837
QAPD01000015
Actinomycetota
Sphaerisporangium cinnabarinum ATCC 31213 [QAPD]
34246
34171
-
Leu
TAA
[ENA]
¡û
>W1810702230
QMGF01000293
Actinomycetota
Cellulomonas sp. K39 [QMGF]
3913
3837
-
Leu
TAA
[ENA]
¡û
>W1810702281
QMGG01000304
Actinomycetota
Cellulomonas sp. K42B [QMGG]
3929
3853
-
Leu
TAA
[ENA]
¡û
>W1810884963
QUMZ01000001
Actinomycetota
Cellulosimicrobium cellulans ZKA48 [QUMZ]
3598467
3598391
-
Leu
TAA
[ENA]
¡û
>W1511219765
JNBQ01000034
Actinomycetota
Cellulosimicrobium funkei U11 [JNBQ]
32973
33049
+
Leu
TAA
[ENA]
¡û
>W1610021799
ATNL01000007
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
381416
381340
-
Leu
TAA
[ENA]
¡û
>W1610069368
BCSK01000044
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
6859
6783
-
Leu
TAA
[ENA]
¡û
>W1610927643
LUAZ01000012
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
81023
81099
+
Leu
TAA
[ENA]
¡û
>W1710018494
ATNL01000007
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
381416
381340
-
Leu
TAA
[ENA]
¡û
>W1710066741
BCSK01000044
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
6859
6783
-
Leu
TAA
[ENA]
¡û
>W1710515500
FNBV01000004
Actinomycetota
Cellulosimicrobium cellulans [FNBV]
362944
362868
-
Leu
TAA
[ENA]
¡û
>W1710596058
FTMI01000007
Actinomycetota
Cellulosimicrobium aquatile [FTMI]
233713
233789
+
Leu
TAA
[ENA]
¡û
>W1710607364
FXAA01000008
Actinomycetota
Cellulosimicrobium cellulans J1 [FXAA]
274113
274189
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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