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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178926 (67 seq.)
>W1710867650
LMIL01000007
Actinomycetota
Oerskovia sp. Root22 [LMIL]
268388
268312
-
Pro
TGG
[ENA]
¡û
>W1710868664
LMJG01000011
Actinomycetota
Oerskovia sp. Root918 [LMJG]
146858
146934
+
Pro
TGG
[ENA]
¡û
>W1711033869
LRIE01000068
Actinomycetota
Oerskovia enterophila [LRIE]
57672
57596
-
Pro
TGG
[ENA]
¡û
>W1711116441
LUAZ01000094
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
112992
113068
+
Pro
TGG
[ENA]
¡û
>W1711178108
LWGL01000136
Actinomycetota
Cellulosimicrobium cellulans [LWGL]
4194
4120
-
Pro
TGG
[ENA]
¡û
>W1711308538
MAQA01000023
Actinomycetota
Oerskovia enterophila [MAQA]
25270
25194
-
Pro
TGG
[ENA]
¡û
>W1712001633
NEDO01000007
Actinomycetota
Cellulosimicrobium sp. KWT-B [NEDO]
5374
5298
-
Pro
TGG
[ENA]
¡û
>C171113723
CP020857
Actinomycetota
Cellulosimicrobium sp. TH-20 [CP020857]
3440105
3440029
-
Pro
TGG
-
¡û
>C171118562
CP021383
Actinomycetota
Cellulosimicrobium cellulans PSBB019 [CP021383]
3738391
3738467
+
Pro
TGG
-
¡û
>W131230348
AUHN01000009
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
289601
289675
+
Pro
TGG
[ENA]
¡û
>W131242704
CAOI01000138
Actinomycetota
Cellulosimicrobium cellulans LMG 16121 [CAOI]
706
630
-
Pro
TGG
[ENA]
¡û
>WENV180280313
OBHY01000004
[OBHY] human gut metagenome; Tissue from the tricuspid valve
4918
4843
-
Pro
TGG
[ENA]
¢þ
>WENV180280464
OBHZ01000001
[OBHZ] human gut metagenome; Vulva exsudate
242585
242510
-
Pro
TGG
[ENA]
¢þ
>WENV180289201
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
320906
320831
-
Pro
TGG
[ENA]
¢þ
>WENV180305042
OBJK01000003
[OBJK] human gut metagenome; Skin biopsy
248135
248060
-
Pro
TGG
[ENA]
¢þ
>WENV180305192
OBJL01000002
[OBJL] human gut metagenome; Skin biopsy
562253
562328
+
Pro
TGG
[ENA]
¢þ
>W141241401
CAHH01000009
Actinomycetota
Timonella senegalensis JC301 [CAHH]
134990
135066
+
Pro
TGG
[ENA]
¡û
>W141241445
CAHH01000055
Actinomycetota
Timonella senegalensis JC301 [CAHH]
14456
14532
+
Pro
TGG
[ENA]
¡û
>W141279559
JAGJ01000027
Actinomycetota
Cellulosimicrobium cellulans J36 [JAGJ]
35877
35953
+
Pro
TGG
[ENA]
¡û
>WENV183635054
OOIR01000025
[OOIR] human gut metagenome; Skin biopsy
5250
5175
-
Pro
TGG
[ENA]
¢þ
>WENV183635144
OOIS01000013
[OOIS] human gut metagenome; Bone, muscular tissue, and connective tissue from the spine extension of third thoracic
5250
5175
-
Pro
TGG
[ENA]
¢þ
>WENV183635200
OOIT01000167
[OOIT] human gut metagenome; Lymphatic node biopsy
4030
4105
+
Pro
TGG
[ENA]
¢þ
>WENV183635307
OOIU01000024
[OOIU] human gut metagenome; Lymphatic node biopsy
99706
99781
+
Pro
TGG
[ENA]
¢þ
>WENV183635447
OOIV01000024
[OOIV] human gut metagenome; Biopsy of a nasal polyp
5250
5175
-
Pro
TGG
[ENA]
¢þ
>WENV183635643
OOIW01000035
[OOIW] human gut metagenome; Skin biopsy
99706
99781
+
Pro
TGG
[ENA]
¢þ
>WENV183635874
OOJA01000027
[OOJA] human gut metagenome; Lung tissue
99706
99781
+
Pro
TGG
[ENA]
¢þ
>WENV183636136
OOJR01000010
[OOJR] human gut metagenome; Lung tissue
5250
5175
-
Pro
TGG
[ENA]
¢þ
>WENV183636327
OOKD01000049
[OOKD] human gut metagenome; Skin biopsy
99706
99781
+
Pro
TGG
[ENA]
¢þ
>WENV183636607
OOKJ01000043
[OOKJ] human gut metagenome; Material from the bottom lip
23572
23647
+
Pro
TGG
[ENA]
¢þ
>WENV183636889
OOQC01000015
[OOQC] human gut metagenome; Biopsy from a wound at the foot
5250
5175
-
Pro
TGG
[ENA]
¢þ
>WENV183637144
OPGP01000028
[OPGP] human gut metagenome; Material from the ethmoid
5250
5175
-
Pro
TGG
[ENA]
¢þ
>WENV183741556
PJUG01000064
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
5015
4940
-
Pro
TGG
[ENA]
¢þ
>WENV183742228
PJUH01002702
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
1679
1754
+
Pro
TGG
[ENA]
¢þ
>WENV183742736
PJUI01000085
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
5015
4940
-
Pro
TGG
[ENA]
¢þ
>WENV170689892
LFRM01316573
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
472
546
+
Pro
TGG
[ENA]
¢þ
>C181055881
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
631529
631605
+
Pro
TGG
-
¡û
>C181212482
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
457179
457103
-
Pro
TGG
-
¡û
>W09109164
ABUA01000008
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
67138
67214
+
Pro
TGG
[ENA]
¡û
>W141731255
JNIY01000003
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
1069530
1069604
+
Pro
TGG
[ENA]
¡û
>W141769443
JOFV01000005
Actinomycetota
Oerskovia turbata [JOFV]
360243
360319
+
Pro
TGG
[ENA]
¡û
>W141808804
JPQW01000119
Actinomycetota
Cellulosimicrobium sp. MM [JPQW]
2993
2917
-
Pro
TGG
[ENA]
¡û
>W141808805
JPQW01000119
Actinomycetota
Cellulosimicrobium sp. MM [JPQW]
846
770
-
Pro
TGG
[ENA]
¡û
>W1910183760
BJNZ01000024
Actinomycetota
Cellulosimicrobium cellulans NBRC 15516 [BJNZ]
5961
5886
-
Pro
TGG
[ENA]
¡û
>W1910549333
FZPE01000003
Actinomycetota
Micrococcales bacterium KH10 [FZPE]
180699
180623
-
Pro
TGG
[ENA]
¡û
>W1911597257
PNHU01000001
Actinomycetota
Gleimia hominis UMB0859 [PNHU]
510900
510826
-
Pro
TGG
[ENA]
¡û
>W1911676374
QGTB01000001
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [QGTB]
85130
85204
+
Pro
TGG
[ENA]
¡û
>W1810090072
PGFE01000001
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
20795
20721
-
Pro
TGG
[ENA]
¡û
>W1810102073
PGTZ01000006
Actinomycetota
Luteimicrobium subarcticum DSM 22413 [PGTZ]
206843
206768
-
Pro
TGG
[ENA]
¡û
>W1810702239
QMGF01000884
Actinomycetota
Cellulomonas sp. K39 [QMGF]
606
681
+
Pro
TGG
[ENA]
¡û
>W1810702272
QMGG01000134
Actinomycetota
Cellulomonas sp. K42B [QMGG]
6050
6125
+
Pro
TGG
[ENA]
¡û
>W1810884950
QUMZ01000001
Actinomycetota
Cellulosimicrobium cellulans ZKA48 [QUMZ]
2008722
2008797
+
Pro
TGG
[ENA]
¡û
>C10107939
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
457337
457261
-
Pro
TGG
[Ensembl]
¡û
>W1510548173
CSVS01000571
Actinomycetota
Mycobacteroides abscessus PAP066 [CSVS]
274
198
-
Pro
TGG
[ENA]
¡û
>W1511219744
JNBQ01000008
Actinomycetota
Cellulosimicrobium funkei U11 [JNBQ]
3298
3374
+
Pro
TGG
[ENA]
¡û
>W121126217
BAGU01000711
Actinomycetota
Promicromonosporaceae bacterium W15 [BAGU]
268
194
-
Pro
TGG
[ENA]
¡û
>W1610021820
ATNL01000011
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
4881
4805
-
Pro
TGG
[ENA]
¡û
>W1610069372
BCSK01000072
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
17451
17527
+
Pro
TGG
[ENA]
¡û
>W1610729996
LMIL01000007
Actinomycetota
Oerskovia sp. Root22 [LMIL]
268388
268312
-
Pro
TGG
[ENA]
¡û
>W1610731010
LMJG01000011
Actinomycetota
Oerskovia sp. Root918 [LMJG]
146858
146934
+
Pro
TGG
[ENA]
¡û
>W1610881644
LRIE01000068
Actinomycetota
Oerskovia enterophila [LRIE]
57672
57596
-
Pro
TGG
[ENA]
¡û
>W1610927683
LUAZ01000094
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
112992
113068
+
Pro
TGG
[ENA]
¡û
>W1611056197
MAQA01000023
Actinomycetota
Oerskovia enterophila [MAQA]
25270
25194
-
Pro
TGG
[ENA]
¡û
>W1710018515
ATNL01000011
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
4881
4805
-
Pro
TGG
[ENA]
¡û
>W1710066745
BCSK01000072
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
17451
17527
+
Pro
TGG
[ENA]
¡û
>W1710515519
FNBV01000009
Actinomycetota
Cellulosimicrobium cellulans [FNBV]
5147
5071
-
Pro
TGG
[ENA]
¡û
>W1710596061
FTMI01000009
Actinomycetota
Cellulosimicrobium aquatile [FTMI]
102317
102393
+
Pro
TGG
[ENA]
¡û
>W1710607383
FXAA01000021
Actinomycetota
Cellulosimicrobium cellulans J1 [FXAA]
4954
4878
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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