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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178928 (53 seq.)
>A171001134
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2898205
2898279
+
Tyr
GTA
-
¡û
>A171003478
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1811942
1812015
+
Tyr
GTA
-
¡û
>A171006152
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
531782
531856
+
Tyr
GTA
-
¡û
>A171006708
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1422795
1422721
-
Tyr
GTA
-
¡û
>A171006749
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
1512337
1512263
-
Tyr
GTA
-
¡û
>A171006982
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2031272
2031198
-
Tyr
GTA
-
¡û
>WENV180273637
OBEU01002272
[OBEU] marine metagenome; marine
582
508
-
Tyr
GTA
[ENA]
¢þ
>WENV180318204
OBKM01000078
[OBKM] metagenome; water
76
2
-
Tyr
GTA
[ENA]
¢þ
>WENV180318384
OBKM01000643
[OBKM] metagenome; water
6893
6967
+
Tyr
GTA
[ENA]
¢þ
>WENV180318469
OBKM01001117
[OBKM] metagenome; water
11179
11253
+
Tyr
GTA
[ENA]
¢þ
>WENV170008883
APHM01012696
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2101
2025
-
Tyr
GTA
[ENA]
¢þ
>WENV170008994
APHM01018472
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2092
2016
-
Tyr
GTA
[ENA]
¢þ
>At0795
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
167315
167388
+
Tyr
GTA
[Ensembl]
¡û
>WENV170659840
JXWS01003122
[JXWS] soil metagenome; rice field; elevated CO2
2226
2150
-
Tyr
GTA
[ENA]
¢þ
>WENV170679981
LFCJ01002136
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7313
7239
-
Tyr
GTA
[ENA]
¢þ
>WENV170681735
LFFM01002363
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6910
6837
-
Tyr
GTA
[ENA]
¢þ
>WENV170681881
LFFM01003840
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8558
8485
-
Tyr
GTA
[ENA]
¢þ
>WENV170703881
LKMJ01017906
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
203
277
+
Tyr
GTA
[ENA]
¢þ
>WENV170703891
LKMJ01018196
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6075
6149
+
Tyr
GTA
[ENA]
¢þ
>W1910006676
BBJN01000050
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
6440
6367
-
Tyr
GTA
[ENA]
¡û
>W1910193796
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
2224468
2224394
-
Tyr
GTA
[ENA]
¡û
>W1910227095
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
11506
11580
+
Tyr
GTA
[ENA]
¡û
>W1910228534
FNQT01000006
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
91662
91589
-
Tyr
GTA
[ENA]
¡û
>W1910229709
FOCX01000020
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
50699
50625
-
Tyr
GTA
[ENA]
¡û
>W1910230633
FOXI01000017
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
5215
5141
-
Tyr
GTA
[ENA]
¡û
>W1910568515
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
548282
548356
+
Tyr
GTA
[ENA]
¡û
>W1910569083
JHUT02000011
Euryarchaeota
Natrinema mahii H13 [JHUT]
27800
27874
+
Tyr
GTA
[ENA]
¡û
>W1910828033
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
1141439
1141365
-
Tyr
GTA
[ENA]
¡û
>W1911572233
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
2400410
2400336
-
Tyr
GTA
[ENA]
¡û
>W1911709178
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
1927752
1927679
-
Tyr
GTA
[ENA]
¡û
>W1911717804
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
55637
55711
+
Tyr
GTA
[ENA]
¡û
>W1911717980
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
626430
626356
-
Tyr
GTA
[ENA]
¡û
>C151003937
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
951875
951801
-
Tyr
GTA
[Ensembl]
¡û
>W1610000827
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
81806
81880
+
Tyr
GTA
[ENA]
¡û
>W1610001050
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
709043
708969
-
Tyr
GTA
[ENA]
¡û
>W1610003678
AGCZ01000366
Euryarchaeota
halophilic archaeon J07HB67 [AGCZ]
2101
2025
-
Tyr
GTA
[ENA]
¡û
>W1610003681
AGCZ01000513
Euryarchaeota
halophilic archaeon J07HB67 [AGCZ]
2092
2016
-
Tyr
GTA
[ENA]
¡û
>W1610004053
AGFZ01000059
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
43005
43078
+
Tyr
GTA
[ENA]
¡û
>W1610005380
AJVG01000013
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
651
577
-
Tyr
GTA
[ENA]
¡û
>W1610012082
AOIA01000114
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
133327
133253
-
Tyr
GTA
[ENA]
¡û
>W1610012529
AOIN01000079
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
8626
8552
-
Tyr
GTA
[ENA]
¡û
>W1610012846
AOIV01000004
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
30590
30664
+
Tyr
GTA
[ENA]
¡û
>W1610014602
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
276645
276570
-
Tyr
GTA
[ENA]
¡û
>W1610014645
AOME01000076
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
83821
83745
-
Tyr
GTA
[ENA]
¡û
>W1610024365
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
1599109
1599182
+
Tyr
GTA
[ENA]
¡û
>W1610041529
BATA01000014
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
36419
36345
-
Tyr
GTA
[ENA]
¡û
>W1610061853
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
291189
291263
+
Tyr
GTA
[ENA]
¡û
>W1610082969
CBMA010000011
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
246506
246579
+
Tyr
GTA
[ENA]
¡û
>W1610083024
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
941940
942014
+
Tyr
GTA
[ENA]
¡û
>W1610085118
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
2313159
2313085
-
Tyr
GTA
[ENA]
¡û
>W1610085217
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
160057
160131
+
Tyr
GTA
[ENA]
¡û
>W1610085299
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
160037
160111
+
Tyr
GTA
[ENA]
¡û
>W1610682683
LKNH01000093
Euryarchaeota
Halobacteriaceae archaeon Tc-Br11_E2g27 [LKNH]
8558
8485
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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