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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178942 (90 seq.)
>W1711433415
MIME01000019
Bacillota
Limosilactobacillus reuteri [MIME]
698
773
+
Arg
ACG
[ENA]
¡û
>W1711433498
MIMF01000114
Bacillota
Limosilactobacillus reuteri [MIMF]
569
644
+
Arg
ACG
[ENA]
¡û
>W1711433542
MIMH01000025
Bacillota
Limosilactobacillus reuteri [MIMH]
566
641
+
Arg
ACG
[ENA]
¡û
>W1711433645
MIMI01000148
Bacillota
Limosilactobacillus reuteri [MIMI]
567
642
+
Arg
ACG
[ENA]
¡û
>W1711433664
MIMJ01000031
Bacillota
Limosilactobacillus reuteri [MIMJ]
1179
1104
-
Arg
ACG
[ENA]
¡û
>W1711433726
MIMK01000021
Bacillota
Limosilactobacillus reuteri [MIMK]
747
822
+
Arg
ACG
[ENA]
¡û
>W1711433877
MIMN01000082
Bacillota
Limosilactobacillus reuteri [MIMN]
107
182
+
Arg
ACG
[ENA]
¡û
>W1711433904
MIMO01000014
Bacillota
Limosilactobacillus reuteri [MIMO]
1460
1385
-
Arg
ACG
[ENA]
¡û
>W1711433973
MIMP01000015
Bacillota
Limosilactobacillus reuteri [MIMP]
566
641
+
Arg
ACG
[ENA]
¡û
>W1711434071
MIMR01000226
Bacillota
Limosilactobacillus reuteri [MIMR]
1181
1106
-
Arg
ACG
[ENA]
¡û
>W1711434089
MIMS01000002
Bacillota
Limosilactobacillus reuteri [MIMS]
599
524
-
Arg
ACG
[ENA]
¡û
>W1711434151
MIMT01000018
Bacillota
Limosilactobacillus reuteri [MIMT]
1180
1105
-
Arg
ACG
[ENA]
¡û
>W1711434211
MIMU01000016
Bacillota
Limosilactobacillus reuteri [MIMU]
569
644
+
Arg
ACG
[ENA]
¡û
>W1711434282
MIMV01000071
Bacillota
Limosilactobacillus reuteri [MIMV]
1432
1357
-
Arg
ACG
[ENA]
¡û
>W1711434335
MIMW01000004
Bacillota
Limosilactobacillus reuteri [MIMW]
569
644
+
Arg
ACG
[ENA]
¡û
>W1711499350
MKQH01000014
Bacillota
Limosilactobacillus reuteri [MKQH]
250236
250161
-
Arg
ACG
[ENA]
¡û
>W1711744927
MUJA01000006
Bacillota
Lactobacillus gasseri [MUJA]
8697
8623
-
Arg
ACG
[ENA]
¡û
>W1711790981
MWIK01000039
Bacillota
Lactobacillus johnsonii [MWIK]
8891
8817
-
Arg
ACG
[ENA]
¡û
>W1711799183
MWVS01000147
Bacillota
Limosilactobacillus reuteri [MWVS]
1897
1822
-
Arg
ACG
[ENA]
¡û
>W1712039816
NFJY01000024
Bacillota
Lactobacillus johnsonii [NFJY]
606
680
+
Arg
ACG
[ENA]
¡û
>C171048924
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
942602
942528
-
Arg
ACG
-
¡û
>C171048948
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
926692
926618
-
Arg
ACG
-
¡û
>C171118813
CP021427
Bacillota
Lactobacillus gasseri 4M13 [CP021427]
1290275
1290349
+
Arg
ACG
-
¡û
>C171128178
LN906634
Bacillota
Limosilactobacillus reuteri subsp. suis ATCC 53608 [LN906634]
1366100
1366025
-
Arg
ACG
-
¡û
>W131194902
ASRG01000032
Bacillota
Lactobacillus paragasseri K7 [ASRG]
530
604
+
Arg
ACG
[ENA]
¡û
>W141087824
AUUE01000006
Bacillota
Lactobacillus gasseri 2016 [AUUE]
15364
15290
-
Arg
ACG
[ENA]
¡û
>W141087847
AUUE01000006
Bacillota
Lactobacillus gasseri 2016 [AUUE]
1193
1119
-
Arg
ACG
[ENA]
¡û
>WENV181187339
OENY01002065
[OENY] human gut metagenome; human gut
1689
1763
+
Arg
ACG
[ENA]
¢þ
>WENV181247152
OFFK01006856
[OFFK] mouse gut metagenome; faeces
968
1042
+
Arg
ACG
[ENA]
¢þ
>WENV181259146
OFFV01023772
[OFFV] mouse gut metagenome; faeces
777
703
-
Arg
ACG
[ENA]
¢þ
>WENV181271465
OFGF01041336
[OFGF] mouse gut metagenome; faeces
162
236
+
Arg
ACG
[ENA]
¢þ
>WENV181272243
OFGG01005159
[OFGG] mouse gut metagenome; faeces
597
671
+
Arg
ACG
[ENA]
¢þ
>WENV181283717
OFGQ01015718
[OFGQ] mouse gut metagenome; faeces
2330
2256
-
Arg
ACG
[ENA]
¢þ
>W141228095
BALQ01000014
Bacillota
Lactobacillus gasseri JCM 1131 [BALQ]
529
603
+
Arg
ACG
[ENA]
¡û
>WENV182409111
OIFG01001854
[OIFG] human gut metagenome; stool
2169
2095
-
Arg
ACG
[ENA]
¢þ
>W141244145
CAKC01000066
Bacillota
Lactobacillus gigeriorum CRBIP 24.85 [CAKC]
20170
20093
-
Arg
ACG
[ENA]
¡û
>W141244164
CAKD01000001
Bacillota
Lactobacillus pasteurii CRBIP 24.76 [CAKD]
150856
150931
+
Arg
ACG
[ENA]
¡û
>W141244186
CAKD01000024
Bacillota
Lactobacillus pasteurii CRBIP 24.76 [CAKD]
181423
181348
-
Arg
ACG
[ENA]
¡û
>WENV182485852
OIRQ01020773
[OIRQ] human gut metagenome; human gut
169
243
+
Arg
ACG
[ENA]
¢þ
>WENV182943912
OKVI01001516
[OKVI] human gut metagenome; human gut
607
681
+
Arg
ACG
[ENA]
¢þ
>WENV183010858
OLDY01000010
[OLDY] human gut metagenome; human gut
47463
47537
+
Arg
ACG
[ENA]
¢þ
>WENV183771920
PPYF01001219
[PPYF] human gut metagenome; stool from patient with Crohn's disease
8083
8009
-
Arg
ACG
[ENA]
¢þ
>C181160203
CP027805
Bacillota
Limosilactobacillus reuteri WHH1689 [CP027805]
661373
661448
+
Arg
ACG
-
¡û
>C181181873
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1641423
1641497
+
Arg
ACG
-
¡û
>C181181897
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1657342
1657416
+
Arg
ACG
-
¡û
>C191078709
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1612649
1612723
+
Arg
ACG
-
¡û
>C191078732
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1627090
1627164
+
Arg
ACG
-
¡û
>C191093488
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1704702
1704628
-
Arg
ACG
-
¡û
>C191093512
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1688785
1688711
-
Arg
ACG
-
¡û
>W1910901063
NGNV01000014
Bacillota
Lactobacillus taiwanensis 609u [NGNV]
11077
11003
-
Arg
ACG
[ENA]
¡û
>W1910901596
NGOF01000013
Bacillota
Lactobacillus johnsonii 117k [NGOF]
656
730
+
Arg
ACG
[ENA]
¡û
>W1910901749
NGOI01000014
Bacillota
Lactobacillus johnsonii 117a [NGOI]
656
730
+
Arg
ACG
[ENA]
¡û
>W1910901948
NGOM01000009
Bacillota
Lactobacillus taiwanensis 111z [NGOM]
10997
10923
-
Arg
ACG
[ENA]
¡û
>W1910902208
NGOR01000004
Bacillota
Lactobacillus taiwanensis 111k [NGOR]
10997
10923
-
Arg
ACG
[ENA]
¡û
>W1910902284
NGOS01000068
Bacillota
Lactobacillus taiwanensis 107v [NGOS]
2407
2333
-
Arg
ACG
[ENA]
¡û
>W1910902519
NGOX01000002
Bacillota
Lactobacillus taiwanensis 103n [NGOX]
10997
10923
-
Arg
ACG
[ENA]
¡û
>W1910918451
NIBB01000057
Bacillota
Lactobacillus johnsonii UMNLJ54 [NIBB]
549
623
+
Arg
ACG
[ENA]
¡û
>W1911595807
PNGP01000011
Bacillota
Lactobacillus iners UMB0033 [PNGP]
635
711
+
Arg
ACG
[ENA]
¡û
>W1911595855
PNGQ01000009
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
867
792
-
Arg
ACG
[ENA]
¡û
>W1911632217
PUFQ01000006
Bacillota
Lactobacillus pasteurii DSM 23907 [PUFQ]
150856
150931
+
Arg
ACG
[ENA]
¡û
>W1911632244
PUFQ01000017
Bacillota
Lactobacillus pasteurii DSM 23907 [PUFQ]
3683
3758
+
Arg
ACG
[ENA]
¡û
>W1810001340
BEXH01000015
Bacillota
Lactobacillus paragasseri JCM 5343 [BEXH]
522
596
+
Arg
ACG
[ENA]
¡û
>W1810190696
PKKA01000048
Bacillota
Lactobacillus gasseri UMB0045 [PKKA]
2121
2047
-
Arg
ACG
[ENA]
¡û
>W1810267990
PQWW01000032
Bacillota
Lactobacillus gasseri JG141 [PQWW]
871
797
-
Arg
ACG
[ENA]
¡û
>W1810786831
QRDF01000118
Bacillota
Limosilactobacillus reuteri LR CGMCC No.11154 [QRDF]
613
688
+
Arg
ACG
[ENA]
¡û
>W10112037
ADDY01000040
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
530
604
+
Arg
ACG
[ENA]
¡û
>W10113196
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
4883
4957
+
Arg
ACG
[ENA]
¡û
>W10113224
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
11047
10973
-
Arg
ACG
[ENA]
¡û
>W11107232
ACWR01000024
Bacillota
Lactobacillus iners 7_1_47FAA [ACWR]
538
614
+
Arg
ACG
[ENA]
¡û
>C11112943
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
1664371
1664297
-
Arg
ACG
[Ensembl]
¡û
>W11115014
ADDY01000040
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
530
604
+
Arg
ACG
[ENA]
¡û
>W11116423
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
4883
4957
+
Arg
ACG
[ENA]
¡û
>W11116451
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
11047
10973
-
Arg
ACG
[ENA]
¡û
>W1511437384
JUKW01000028
Bacillota
Lactobacillus gasseri 987_LJOH [JUKW]
158
232
+
Arg
ACG
[ENA]
¡û
>W1511453088
JVEV01000020
Bacillota
Lactobacillus gasseri 497_LGAS [JVEV]
506
580
+
Arg
ACG
[ENA]
¡û
>W1511454695
JVGG01000068
Bacillota
Lactobacillus gasseri 459_LHEL [JVGG]
512
586
+
Arg
ACG
[ENA]
¡û
>W11137486
AEHO01000003
Bacillota
Lactobacillus iners LactinV 09V1-c [AEHO]
538
614
+
Arg
ACG
[ENA]
¡û
>W11151761
AEXK01000006
Bacillota
Lactobacillus iners UPII 60-B [AEXK]
538
614
+
Arg
ACG
[ENA]
¡û
>W11186004
CACS02000096
Bacillota
Limosilactobacillus reuteri ATCC 53608 [CACS]
478
553
+
Arg
ACG
[ENA]
¡û
>C161077651
CP014786
Bacillota
Limosilactobacillus reuteri ZLR003 [CP014786]
573866
573791
-
Arg
ACG
[Ensembl]
¡û
>W121126744
CACS02000096
Bacillota
Limosilactobacillus reuteri ATCC 53608 [CACS]
478
553
+
Arg
ACG
[ENA]
¡û
>W1610032339
AYZN01000018
Bacillota
Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 [AYZN]
10515
10440
-
Arg
ACG
[ENA]
¡û
>W1610032374
AYZO01000048
Bacillota
Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85 [AYZO]
81
158
+
Arg
ACG
[ENA]
¡û
>W1610035768
AZET01000002
Bacillota
Lactobacillus iners DSM 13335 [AZET]
141262
141186
-
Arg
ACG
[ENA]
¡û
>W1610104882
CZDA01000081
Bacillota
Limosilactobacillus reuteri [CZDA]
496
571
+
Arg
ACG
[ENA]
¡û
>W1610104949
CZDB01000076
Bacillota
Limosilactobacillus reuteri [CZDB]
496
571
+
Arg
ACG
[ENA]
¡û
>C131016755
CP006011
Bacillota
Limosilactobacillus reuteri I5007 [CP006011]
1374150
1374075
-
Arg
ACG
[Ensembl]
¡û
>W1710032807
AZET01000002
Bacillota
Lactobacillus iners DSM 13335 [AZET]
141262
141186
-
Arg
ACG
[ENA]
¡û
>W1710107586
CZDA01000081
Bacillota
Limosilactobacillus reuteri [CZDA]
496
571
+
Arg
ACG
[ENA]
¡û
>W1710107653
CZDB01000076
Bacillota
Limosilactobacillus reuteri [CZDB]
496
571
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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