This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178956 (64 seq.)
>W1710782873
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
843988
843913
-
Ile
GAT
[ENA]
¡û
>W1711128602
LUSO01000020
Bacillota
Clostridium baratii [LUSO]
202
278
+
Ile
GAT
[ENA]
¡û
>W1711430607
MIJE01000008
Bacillota
Desulfuribacillus alkaliarsenatis [MIJE]
17506
17430
-
Ile
GAT
[ENA]
¡û
>W1711462169
MJHM01000029
Bacillota
Clostridium baratii [MJHM]
202
278
+
Ile
GAT
[ENA]
¡û
>W1711487603
MKGE01000001
Bacillota
Limosilactobacillus fermentum [MKGE]
12215
12140
-
Ile
GAT
[ENA]
¡û
>W141094624
AVCT01000026
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
1945
2020
+
Ile
GAT
[ENA]
¡û
>WENV181483629
OGFK01012053
[OGFK] metagenome; Human gut stool
2056
1981
-
Ile
GAT
[ENA]
¢þ
>WENV181563208
OGJG01007139
[OGJG] metagenome; Human gut stool
137
212
+
Ile
GAT
[ENA]
¢þ
>WENV181574742
OGJT01008006
[OGJT] metagenome; Human gut stool
154
229
+
Ile
GAT
[ENA]
¢þ
>W141244276
CAKF01000001
Bacillota
Limosilactobacillus ingluviei str. Autruche 4 [CAKF]
1282
1357
+
Ile
GAT
[ENA]
¡û
>C08002849
CP000962
Bacillota
Clostridium botulinum A3 str. Loch Maree [CP000962]
504913
504989
+
Ile
GAT
[Ensembl]
¡û
>WENV182825566
OKCK01000608
[OKCK] human gut metagenome; human gut
3960
4036
+
Ile
GAT
[ENA]
¢þ
>WENV182963635
OKWQ01004500
[OKWQ] human gut metagenome; stool
82
158
+
Ile
GAT
[ENA]
¢þ
>WENV183145229
OLOL01057797
[OLOL] human gut metagenome; faeces
580
505
-
Ile
GAT
[ENA]
¢þ
>WENV183548886
OOAY01003660
[OOAY] human gut metagenome; human gut
1
76
+
Ile
GAT
[ENA]
¢þ
>WENV183555365
OOBN01002242
[OOBN] human gut metagenome; human gut
12086
12011
-
Ile
GAT
[ENA]
¢þ
>WENV183606620
OODN01022443
[OODN] human gut metagenome; human gut
479
554
+
Ile
GAT
[ENA]
¢þ
>C181226936
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
638347
638422
+
Ile
GAT
-
¡û
>W09122647
ACGI01000081
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
1226
1151
-
Ile
GAT
[ENA]
¡û
>W1910374080
FUHY01000067
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
82009
81934
-
Ile
GAT
[ENA]
¡û
>W1910954307
NJPQ01000008
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
56294
56219
-
Ile
GAT
[ENA]
¡û
>W1810090704
PGGJ01000083
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
329
254
-
Ile
GAT
[ENA]
¡û
>W1810489164
QAZV01000007
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
1402
1477
+
Ile
GAT
[ENA]
¡û
>W1810595142
QGDR01000001
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
114278
114203
-
Ile
GAT
[ENA]
¡û
>W1810595159
QGDR01000002
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
91996
91921
-
Ile
GAT
[ENA]
¡û
>W1810595174
QGDR01000005
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
42994
42919
-
Ile
GAT
[ENA]
¡û
>W1810595195
QGDR01000006
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
422098
422173
+
Ile
GAT
[ENA]
¡û
>W1810595216
QGDR01000009
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
1665
1740
+
Ile
GAT
[ENA]
¡û
>W1810705687
QMJM01000104
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
1296
1371
+
Ile
GAT
[ENA]
¡û
>C151075270
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
381563
381638
+
Ile
GAT
[Ensembl]
¡û
>C151075283
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
764135
764210
+
Ile
GAT
[Ensembl]
¡û
>C151075301
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1739721
1739646
-
Ile
GAT
[Ensembl]
¡û
>C151075316
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1735007
1734932
-
Ile
GAT
[Ensembl]
¡û
>C151075328
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1637174
1637099
-
Ile
GAT
[Ensembl]
¡û
>C151084256
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
650750
650825
+
Ile
GAT
-
¡û
>W1510021796
BCAH01000024
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
1280
1355
+
Ile
GAT
[ENA]
¡û
>W1510650148
CVQW01000002
Bacillota
Limosilactobacillus mucosae LM1 Marseille [CVQW]
253
328
+
Ile
GAT
[ENA]
¡û
>W1510650153
CVQW01000002
Bacillota
Limosilactobacillus mucosae LM1 Marseille [CVQW]
784
859
+
Ile
GAT
[ENA]
¡û
>W1511352323
JROC01000011
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1349
1424
+
Ile
GAT
[ENA]
¡û
>W1511352328
JROC01000016
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
5976
6051
+
Ile
GAT
[ENA]
¡û
>W1511352371
JROC01000029
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1671
1746
+
Ile
GAT
[ENA]
¡û
>W1511352383
JROC01000032
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
112526
112451
-
Ile
GAT
[ENA]
¡û
>W1511352397
JROC01000033
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
749
674
-
Ile
GAT
[ENA]
¡û
>W1511388691
JSWI01000006
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
55847
55772
-
Ile
GAT
[ENA]
¡û
>W1511388714
JSWI01000030
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
1249
1174
-
Ile
GAT
[ENA]
¡û
>W1511388733
JSWI01000035
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
1556
1481
-
Ile
GAT
[ENA]
¡û
>W1511388737
JSWI01000054
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
495
570
+
Ile
GAT
[ENA]
¡û
>W1511388739
JSWI01000063
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
3443
3368
-
Ile
GAT
[ENA]
¡û
>W1511580715
LARO01000071
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
2455
2530
+
Ile
GAT
[ENA]
¡û
>W1511589472
LBDG01000003
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
6389
6464
+
Ile
GAT
[ENA]
¡û
>W1610035642
AZEQ01000053
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
1484
1559
+
Ile
GAT
[ENA]
¡û
>W1610035647
AZEQ01000083
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
275
200
-
Ile
GAT
[ENA]
¡û
>W1610044690
BBAS01000032
Bacillota
Limosilactobacillus equigenerosi DSM 18793 = JCM 14505 [BBAS]
1307
1381
+
Ile
GAT
[ENA]
¡û
>W1610528209
JQBA01000011
Bacillota
Limosilactobacillus ingluviei [JQBA]
1424
1499
+
Ile
GAT
[ENA]
¡û
>W1610616824
LGRR01000009
Bacillota
Clostridium baratii [LGRR]
693
617
-
Ile
GAT
[ENA]
¡û
>W1610616852
LGRR01000019
Bacillota
Clostridium baratii [LGRR]
272
348
+
Ile
GAT
[ENA]
¡û
>W1610647381
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
843988
843913
-
Ile
GAT
[ENA]
¡û
>W1710032681
AZEQ01000053
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
1484
1559
+
Ile
GAT
[ENA]
¡û
>W1710032686
AZEQ01000083
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
275
200
-
Ile
GAT
[ENA]
¡û
>W1710041788
BBAS01000032
Bacillota
Limosilactobacillus equigenerosi DSM 18793 = JCM 14505 [BBAS]
1307
1381
+
Ile
GAT
[ENA]
¡û
>W1710566938
FOSI01000007
Bacillota
Limosilactobacillus mucosae [FOSI]
737
812
+
Ile
GAT
[ENA]
¡û
>W1710629799
JQBA01000011
Bacillota
Limosilactobacillus ingluviei [JQBA]
1424
1499
+
Ile
GAT
[ENA]
¡û
>W1710742163
LGRR01000009
Bacillota
Clostridium baratii [LGRR]
693
617
-
Ile
GAT
[ENA]
¡û
>W1710742191
LGRR01000019
Bacillota
Clostridium baratii [LGRR]
272
348
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK