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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178982 (50 seq.)
>W1711385391
MEED01000044
Betaproteobacteria
Lautropia sp. SCN 69-89 [MEED]
561
637
+
Gln
TTG
[ENA]
¡û
>C171085200
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
585604
585528
-
Gln
TTG
-
¡û
>W131050732
AMXA01000026
Betaproteobacteria
Thauera sp. 28 [AMXA]
8509
8585
+
Gln
TTG
[ENA]
¡û
>W131050769
AMXB01000011
Betaproteobacteria
Thauera sp. 27 [AMXB]
46587
46511
-
Gln
TTG
[ENA]
¡û
>W131050835
AMXC01000025
Betaproteobacteria
Thauera sp. 63 [AMXC]
26741
26665
-
Gln
TTG
[ENA]
¡û
>W131050873
AMXD01000057
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
11080
11156
+
Gln
TTG
[ENA]
¡û
>W131050932
AMXE01000020
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
28970
28894
-
Gln
TTG
[ENA]
¡û
>W131050984
AMXF01000093
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
13532
13456
-
Gln
TTG
[ENA]
¡û
>C001328
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
807679
807603
-
Gln
TTG
[Ensembl]
¡û
>WENV180297289
OBJA01020039
[OBJA] soil metagenome; sediment, water from around vicinity
76
1
-
Gln
TTG
[ENA]
¢þ
>WENV180297582
OBJA01047417
[OBJA] soil metagenome; sediment, water from around vicinity
87
11
-
Gln
TTG
[ENA]
¢þ
>WENV180746318
ODHM01059897
[ODHM] human metagenome; G_DNA_Buccal mucosa
203
277
+
Gln
TTG
[ENA]
¢þ
>W141078545
ATJV01000103
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
8539
8463
-
Gln
TTG
[ENA]
¡û
>W08007997
ABKT01000007
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
160230
160306
+
Gln
TTG
[ENA]
¡û
>WENV181414732
OGCL01001209
[OGCL] hot springs metagenome; Hot spring water
23018
23095
+
Gln
TTG
[ENA]
¢þ
>WENV183673137
ORJL011246345
[ORJL] groundwater metagenome; groundwater
464
540
+
Gln
TTG
[ENA]
¢þ
>WENV170000174
AERA01019508
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
2347
2271
-
Gln
TTG
[ENA]
¢þ
>WENV170560975
CZCA01001705
[CZCA] anaerobic digester metagenome; anaerobic digester
4059
4135
+
Gln
TTG
[ENA]
¢þ
>WENV170652573
JRYH01007056
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
313
389
+
Gln
TTG
[ENA]
¢þ
>WENV170652679
JRYH01013768
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
449
525
+
Gln
TTG
[ENA]
¢þ
>WENV170653247
JRYI01031717
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
62
138
+
Gln
TTG
[ENA]
¢þ
>WENV170658097
JTFP01054716
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
539
615
+
Gln
TTG
[ENA]
¢þ
>WENV170658474
JTFP01118311
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
88
12
-
Gln
TTG
[ENA]
¢þ
>WENV170705298
LLEQ01004499
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
504
580
+
Gln
TTG
[ENA]
¢þ
>C181043015
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
589846
589770
-
Gln
TTG
-
¡û
>C181081495
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
50492
50416
-
Gln
TTG
-
¡û
>C181121221
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
998975
998899
-
Gln
TTG
-
¡û
>C181164207
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
564980
564904
-
Gln
TTG
-
¡û
>C181165180
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
530392
530316
-
Gln
TTG
-
¡û
>C181176829
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
662892
662816
-
Gln
TTG
-
¡û
>C191007527
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
2456557
2456481
-
Gln
TTG
-
¡û
>C191022922
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
984404
984328
-
Gln
TTG
-
¡û
>W141561720
JHYR01000007
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
59539
59463
-
Gln
TTG
[ENA]
¡û
>W1911114371
NOIH01000014
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
88664
88740
+
Gln
TTG
[ENA]
¡û
>W1810444927
PZKC01000018
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
6771
6847
+
Gln
TTG
[ENA]
¡û
>C10113190
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
3984393
3984469
+
Gln
TTG
[Ensembl]
¡û
>WENV11100532
AERA01019508
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
2347
2271
-
Gln
TTG
[ENA]
¡û
>W1511398289
JTDM01000016
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
63099
63023
-
Gln
TTG
[ENA]
¡û
>W1511686445
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
89258
89334
+
Gln
TTG
[ENA]
¡û
>W11185911
CACR01001572
Betaproteobacteria
Thauera selenatis AX [CACR]
1156
1232
+
Gln
TTG
[ENA]
¡û
>C121016339
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
389819
389895
+
Gln
TTG
[Ensembl]
¡û
>C161075098
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
2634565
2634641
+
Gln
TTG
[Ensembl]
¡û
>C161095115
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
856265
856189
-
Gln
TTG
-
¡û
>W1610042911
BAZL01000217
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
2416
2340
-
Gln
TTG
[ENA]
¡û
>W1610071689
BCUG01000015
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
128764
128840
+
Gln
TTG
[ENA]
¡û
>W1610085496
CTRK01000063
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
7588
7664
+
Gln
TTG
[ENA]
¡û
>W1710040071
BAZL01000217
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
2416
2340
-
Gln
TTG
[ENA]
¡û
>W1710068891
BCUG01000015
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
128764
128840
+
Gln
TTG
[ENA]
¡û
>W1710090085
CTRK01000063
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
7588
7664
+
Gln
TTG
[ENA]
¡û
>W1710539466
FNVJ01000018
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
40917
40841
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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