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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179041 (34 seq.)
>A171002053
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
212943
212868
-
Arg
TCT
-
¡û
>A171002251
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2354932
2355007
+
Arg
TCT
-
¡û
>A171003995
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2300722
2300797
+
Arg
TCT
-
¡û
>A171006550
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
2147432
2147358
-
Arg
TCT
-
¡û
>A171007319
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1860676
1860751
+
Arg
TCT
-
¡û
>A171007350
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1154143
1154218
+
Arg
TCT
-
¡û
>A171007402
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2301075
2301150
+
Arg
TCT
-
¡û
>A171007667
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2254292
2254365
+
Arg
TCT
-
¡û
>WENV180677997
OCVV011841330
[OCVV] gut metagenome; gut
166
240
+
Arg
TCT
[ENA]
¢þ
>WENV180677998
OCVV011841330
[OCVV] gut metagenome; gut
166
240
+
Arg
TCT
[ENA]
¢þ
>WENV180678733
OCVV012068020
[OCVV] gut metagenome; gut
90
16
-
Arg
TCT
[ENA]
¢þ
>WENV180678734
OCVV012068020
[OCVV] gut metagenome; gut
90
16
-
Arg
TCT
[ENA]
¢þ
>WENV180685777
OCVV012877093
[OCVV] gut metagenome; gut
1800
1726
-
Arg
TCT
[ENA]
¢þ
>WENV180685779
OCVV012877093
[OCVV] gut metagenome; gut
1800
1726
-
Arg
TCT
[ENA]
¢þ
>WENV181229674
OFEK01000020
[OFEK] activated sludge metagenome; Anaerobic digester
11543
11618
+
Arg
TCT
[ENA]
¢þ
>WENV170669984
LAHS01012420
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
3119
3192
+
Arg
TCT
[ENA]
¢þ
>WENV170671402
LAHU01046962
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1868
1943
+
Arg
TCT
[ENA]
¢þ
>WENV170671403
LAHU01046962
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1727
1652
-
Arg
TCT
[ENA]
¢þ
>WENV170677314
LDZT01004917
[LDZT] terrestrial metagenome; oil reservoir sample SB1
13487
13412
-
Arg
TCT
[ENA]
¢þ
>WENV170678223
LDZT01012466
[LDZT] terrestrial metagenome; oil reservoir sample SB1
146
73
-
Arg
TCT
[ENA]
¢þ
>WENV170970288
MTKW01060717
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
628
703
+
Arg
TCT
[ENA]
¢þ
>W1910230548
FOTL01000027
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
5543
5469
-
Arg
TCT
[ENA]
¡û
>W1910574939
JQJK01000016
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
49025
48951
-
Arg
TCT
[ENA]
¡û
>W1910574967
JQKN01000012
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
43357
43283
-
Arg
TCT
[ENA]
¡û
>W1910575099
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2237762
2237837
+
Arg
TCT
[ENA]
¡û
>W1910635136
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
293783
293709
-
Arg
TCT
[ENA]
¡û
>W1910655461
LZPM01000029
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
117741
117815
+
Arg
TCT
[ENA]
¡û
>W1911533098
OKQL01000102
Euryarchaeota
Methanobrevibacter oralis M2 CSUR P5920 [OKQL]
89689
89615
-
Arg
TCT
[ENA]
¡û
>W1610006241
AMGN01000054
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
30006
29931
-
Arg
TCT
[ENA]
¡û
>W1610010997
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
153472
153547
+
Arg
TCT
[ENA]
¡û
>W1610049132
BBES01000001
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
139795
139870
+
Arg
TCT
[ENA]
¡û
>W1610083285
CBWS010000003
Euryarchaeota
Methanobrevibacter oralis JMR01 [CBWS]
65877
65951
+
Arg
TCT
[ENA]
¡û
>W1610613868
LGGL01000024
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
13487
13412
-
Arg
TCT
[ENA]
¡û
>W1610990716
LWMU01000081
Euryarchaeota
Methanobrevibacter oralis DSM 7256 [LWMU]
89689
89615
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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