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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179043 (48 seq.)
>A171004003
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2131980
2131906
-
Tyr
GTA
-
¡û
>A171006560
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1547878
1547803
-
Tyr
GTA
-
¡û
>A171007303
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
224333
224407
+
Tyr
GTA
-
¡û
>A171007357
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1603804
1603878
+
Tyr
GTA
-
¡û
>A171007388
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
260837
260911
+
Tyr
GTA
-
¡û
>WENV180240455
OBDD01000101
[OBDD] human gut metagenome; human gut
155
230
+
Tyr
GTA
[ENA]
¢þ
>WENV180335728
OBLG01000208
[OBLG] human gut metagenome; human gut
40216
40291
+
Tyr
GTA
[ENA]
¢þ
>WENV180529246
OCHJ01172333
[OCHJ] human gut metagenome; human gut
36
111
+
Tyr
GTA
[ENA]
¢þ
>WENV180545615
OCIU01000008
[OCIU] human gut metagenome; human gut
224089
224014
-
Tyr
GTA
[ENA]
¢þ
>WENV180656796
OCVV010598069
[OCVV] gut metagenome; gut
197
124
-
Tyr
GTA
[ENA]
¢þ
>WENV180656798
OCVV010598069
[OCVV] gut metagenome; gut
197
124
-
Tyr
GTA
[ENA]
¢þ
>WENV180829685
ODKA01320869
[ODKA] human metagenome; G_DNA_Stool
186
111
-
Tyr
GTA
[ENA]
¢þ
>WENV181230175
OFEK01000389
[OFEK] activated sludge metagenome; Anaerobic digester
3228
3302
+
Tyr
GTA
[ENA]
¢þ
>WENV181336082
OFMD01000010
[OFMD] human gut metagenome; human gut
167586
167661
+
Tyr
GTA
[ENA]
¢þ
>WENV181345272
OFML01000013
[OFML] human gut metagenome; human gut
189053
189128
+
Tyr
GTA
[ENA]
¢þ
>WENV181355960
OFMT01015114
[OFMT] human gut metagenome; human gut
325
250
-
Tyr
GTA
[ENA]
¢þ
>WENV181905109
OGXX01091345
[OGXX] human gut metagenome; faeces
475
550
+
Tyr
GTA
[ENA]
¢þ
>WENV182127307
OHJU01013109
[OHJU] human gut metagenome; feces
411
336
-
Tyr
GTA
[ENA]
¢þ
>WENV182180325
OHNO01000470
[OHNO] human gut metagenome; feces
10831
10906
+
Tyr
GTA
[ENA]
¢þ
>WENV182235452
OHRT01000187
[OHRT] human gut metagenome; feces
420
495
+
Tyr
GTA
[ENA]
¢þ
>WENV182289248
OHVU01033656
[OHVU] human gut metagenome; feces
220
145
-
Tyr
GTA
[ENA]
¢þ
>WENV182290262
OHVX01008956
[OHVX] human gut metagenome; feces
825
750
-
Tyr
GTA
[ENA]
¢þ
>WENV182397987
OIEN01000219
[OIEN] human gut metagenome; human gut
9058
8983
-
Tyr
GTA
[ENA]
¢þ
>WENV182662562
OJMO01000001
[OJMO] human gut metagenome; feces
289867
289942
+
Tyr
GTA
[ENA]
¢þ
>WENV182884044
OKSC01000004
[OKSC] human gut metagenome; faeces
264801
264876
+
Tyr
GTA
[ENA]
¢þ
>WENV182899745
OKST01000921
[OKST] human gut metagenome; feces
14356
14281
-
Tyr
GTA
[ENA]
¢þ
>WENV183160222
OLOV01000004
[OLOV] human gut metagenome; faeces
129965
130040
+
Tyr
GTA
[ENA]
¢þ
>WENV183172092
OLPC01003421
[OLPC] human gut metagenome; faeces
1275
1350
+
Tyr
GTA
[ENA]
¢þ
>WENV183222791
OLQM01003096
[OLQM] human gut metagenome; faeces
80
5
-
Tyr
GTA
[ENA]
¢þ
>WENV183293068
OLSK01000009
[OLSK] human gut metagenome; faeces
192027
192102
+
Tyr
GTA
[ENA]
¢þ
>WENV183295300
OLSL01000665
[OLSL] human gut metagenome; faeces
5059
5134
+
Tyr
GTA
[ENA]
¢þ
>WENV183382836
OLYL01021282
[OLYL] human gut metagenome; feces
790
715
-
Tyr
GTA
[ENA]
¢þ
>WENV183425593
OMBK01031753
[OMBK] human gut metagenome; feces
458
533
+
Tyr
GTA
[ENA]
¢þ
>WENV183439019
OMCF01021282
[OMCF] human gut metagenome; feces
790
715
-
Tyr
GTA
[ENA]
¢þ
>WENV183518957
OMNT01000025
[OMNT] human gut metagenome; faeces
11489
11414
-
Tyr
GTA
[ENA]
¢þ
>WENV183775366
PPYF01065607
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1955
2030
+
Tyr
GTA
[ENA]
¢þ
>WENV183786698
PPYF01306028
[PPYF] human gut metagenome; stool from patient with Crohn's disease
11197
11122
-
Tyr
GTA
[ENA]
¢þ
>At0908
CP000678
Euryarchaeota
Methanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
878607
878534
-
Tyr
GTA
[Ensembl]
¡û
>WENV170651576
JRYF01094348
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
813
738
-
Tyr
GTA
[ENA]
¢þ
>WENV170670881
LAHU01003268
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
6648
6573
-
Tyr
GTA
[ENA]
¢þ
>WENV170677302
LDZT01004896
[LDZT] terrestrial metagenome; oil reservoir sample SB1
14493
14419
-
Tyr
GTA
[ENA]
¢þ
>WENV170972471
MTKX01031377
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
873
799
-
Tyr
GTA
[ENA]
¢þ
>WENV170978687
MTKZ01058273
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1462
1388
-
Tyr
GTA
[ENA]
¢þ
>W1610002483
AELP01000011
Euryarchaeota
Methanobrevibacter smithii TS146D [AELP]
32744
32669
-
Tyr
GTA
[ENA]
¡û
>W1610006249
AMGN01000088
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
367
293
-
Tyr
GTA
[ENA]
¡û
>W1610011009
AMPO01000003
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
59006
59080
+
Tyr
GTA
[ENA]
¡û
>W1610049138
BBES01000002
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
207559
207633
+
Tyr
GTA
[ENA]
¡û
>W1610613856
LGGL01000003
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
14493
14419
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK