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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179046 (28 seq.)
>A171000087
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
696946
697021
+
Gly
GCC
-
¡û
>A171000896
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1099398
1099473
+
Gly
GCC
-
¡û
>A171003992
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1818250
1818326
+
Gly
GCC
-
¡û
>A171007337
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
503636
503561
-
Gly
GCC
-
¡û
>A171007368
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
2433385
2433461
+
Gly
GCC
-
¡û
>A171007424
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
600899
600823
-
Gly
GCC
-
¡û
>A171007699
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1089360
1089435
+
Gly
GCC
-
¡û
>WENV181229635
OFEK01000013
[OFEK] activated sludge metagenome; Anaerobic digester
245376
245452
+
Gly
GCC
[ENA]
¢þ
>WENV181229987
OFEK01000159
[OFEK] activated sludge metagenome; Anaerobic digester
72409
72333
-
Gly
GCC
[ENA]
¢þ
>WENV170021127
BBPF01003008
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
107
183
+
Gly
GCC
[ENA]
¢þ
>At1650
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
719951
720024
+
Gly
GCC
[Ensembl]
¡û
>WENV170668625
LAHQ01006089
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
140
67
-
Gly
GCC
[ENA]
¢þ
>WENV170670651
LAHT01107586
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
210
137
-
Gly
GCC
[ENA]
¢þ
>WENV170675697
LDZQ01000296
[LDZQ] terrestrial metagenome; oil reservoir sample I2
2288
2363
+
Gly
GCC
[ENA]
¢þ
>WENV170675912
LDZQ01001239
[LDZQ] terrestrial metagenome; oil reservoir sample I2
87
12
-
Gly
GCC
[ENA]
¢þ
>WENV170675920
LDZQ01001334
[LDZQ] terrestrial metagenome; oil reservoir sample I2
2693
2618
-
Gly
GCC
[ENA]
¢þ
>WENV170676694
LDZS01001953
[LDZS] terrestrial metagenome; oil reservoir sample K3
7609
7684
+
Gly
GCC
[ENA]
¢þ
>WENV170677325
LDZT01004954
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10765
10841
+
Gly
GCC
[ENA]
¢þ
>WENV170690011
LFRM01321466
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3305
3230
-
Gly
GCC
[ENA]
¢þ
>WENV170975515
MTKZ01001000
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7521
7597
+
Gly
GCC
[ENA]
¢þ
>W1911690470
QLOE01000011
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
2748
2673
-
Gly
GCC
[ENA]
¡û
>W1911722789
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
531060
530985
-
Gly
GCC
[ENA]
¡û
>W1610006243
AMGN01000059
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13630
13555
-
Gly
GCC
[ENA]
¡û
>W1610011030
AMPO01000009
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
30597
30672
+
Gly
GCC
[ENA]
¡û
>W1610049145
BBES01000003
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
11893
11817
-
Gly
GCC
[ENA]
¡û
>W1610612491
LGEU01000053
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
87
12
-
Gly
GCC
[ENA]
¡û
>W1610612499
LGEU01000148
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
2693
2618
-
Gly
GCC
[ENA]
¡û
>W1610613879
LGGL01000061
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
10765
10841
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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