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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179053 (34 seq.)
>WENV180124091
OASX01001889
[OASX] human gut metagenome; faeces
4515
4439
-
Arg
TCT
[ENA]
¢þ
>WENV183063013
OLIF01000415
[OLIF] metagenome; faeces
3687
3763
+
Arg
TCT
[ENA]
¢þ
>C181099005
CP024282
Gammaproteobacteria
Escherichia albertii 2014C-4356 [CP024282]
3291004
3291080
+
Arg
TCT
-
¡û
>C181192776
CP030781
Gammaproteobacteria
Escherichia albertii 07-3866 [CP030781]
2026823
2026747
-
Arg
TCT
-
¡û
>C181192871
CP030783
Gammaproteobacteria
Escherichia albertii 2012EL-1823B [CP030783]
2310886
2310810
-
Arg
TCT
-
¡û
>C191120589
CP034162
Gammaproteobacteria
Escherichia albertii 06-3542 [CP034162]
630119
630195
+
Arg
TCT
-
¡û
>C191120760
CP034166
Gammaproteobacteria
Escherichia albertii 2014C-4015 [CP034166]
703258
703182
-
Arg
TCT
-
¡û
>W1910038449
BEGZ01000005
Gammaproteobacteria
Escherichia albertii Hiroshima3582 [BEGZ]
1769
1693
-
Arg
TCT
[ENA]
¡û
>W1910175861
BJCT01000059
Gammaproteobacteria
Escherichia albertii ZAH-1-3 [BJCT]
4550
4626
+
Arg
TCT
[ENA]
¡û
>W1910176005
BJCV01000106
Gammaproteobacteria
Escherichia albertii ZAI-52-1 [BJCV]
2044
1968
-
Arg
TCT
[ENA]
¡û
>W1910176090
BJCW01000051
Gammaproteobacteria
Escherichia albertii U350-1 [BJCW]
1906
1830
-
Arg
TCT
[ENA]
¡û
>W1910176174
BJCX01000118
Gammaproteobacteria
Escherichia albertii AZK-6-2 [BJCX]
2044
1968
-
Arg
TCT
[ENA]
¡û
>W1910176625
BJDD01000057
Gammaproteobacteria
Escherichia albertii Mkr3965 [BJDD]
4550
4626
+
Arg
TCT
[ENA]
¡û
>W1910176706
BJDE01000028
Gammaproteobacteria
Escherichia albertii Esc18014 [BJDE]
2044
1968
-
Arg
TCT
[ENA]
¡û
>W1810307141
PTRR01000002
Gammaproteobacteria
Escherichia albertii MOD1-EC1724 [PTRR]
22314
22238
-
Arg
TCT
[ENA]
¡û
>W1810308961
PTSQ01000005
Gammaproteobacteria
Escherichia albertii MOD1-EC5952 [PTSQ]
267050
267126
+
Arg
TCT
[ENA]
¡û
>W1610054845
BBVE01000009
Gammaproteobacteria
Escherichia albertii [BBVE]
1969
1893
-
Arg
TCT
[ENA]
¡û
>W1610055123
BBVI01000034
Gammaproteobacteria
Escherichia albertii [BBVI]
1807
1731
-
Arg
TCT
[ENA]
¡û
>W1610055179
BBVJ01000075
Gammaproteobacteria
Escherichia albertii [BBVJ]
3447
3523
+
Arg
TCT
[ENA]
¡û
>W1610055377
BBVN01000010
Gammaproteobacteria
Escherichia albertii [BBVN]
176183
176259
+
Arg
TCT
[ENA]
¡û
>W1610055534
BBVP01000042
Gammaproteobacteria
Escherichia albertii [BBVP]
1812
1736
-
Arg
TCT
[ENA]
¡û
>W1610055728
BBVS01000054
Gammaproteobacteria
Escherichia albertii [BBVS]
1741
1665
-
Arg
TCT
[ENA]
¡û
>W1610055789
BBVT01000057
Gammaproteobacteria
Escherichia albertii [BBVT]
2262
2186
-
Arg
TCT
[ENA]
¡û
>W1610056173
BBWA01000002
Gammaproteobacteria
Escherichia albertii [BBWA]
570202
570278
+
Arg
TCT
[ENA]
¡û
>W1610056378
BBWC01000028
Gammaproteobacteria
Escherichia albertii [BBWC]
1699
1623
-
Arg
TCT
[ENA]
¡û
>W1710051544
BBVE01000009
Gammaproteobacteria
Escherichia albertii [BBVE]
1969
1893
-
Arg
TCT
[ENA]
¡û
>W1710051822
BBVI01000034
Gammaproteobacteria
Escherichia albertii [BBVI]
1807
1731
-
Arg
TCT
[ENA]
¡û
>W1710051878
BBVJ01000075
Gammaproteobacteria
Escherichia albertii [BBVJ]
3447
3523
+
Arg
TCT
[ENA]
¡û
>W1710052076
BBVN01000010
Gammaproteobacteria
Escherichia albertii [BBVN]
176183
176259
+
Arg
TCT
[ENA]
¡û
>W1710052233
BBVP01000042
Gammaproteobacteria
Escherichia albertii [BBVP]
1812
1736
-
Arg
TCT
[ENA]
¡û
>W1710052427
BBVS01000054
Gammaproteobacteria
Escherichia albertii [BBVS]
1741
1665
-
Arg
TCT
[ENA]
¡û
>W1710052488
BBVT01000057
Gammaproteobacteria
Escherichia albertii [BBVT]
2262
2186
-
Arg
TCT
[ENA]
¡û
>W1710052872
BBWA01000002
Gammaproteobacteria
Escherichia albertii [BBWA]
570202
570278
+
Arg
TCT
[ENA]
¡û
>W1710053077
BBWC01000028
Gammaproteobacteria
Escherichia albertii [BBWC]
1699
1623
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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