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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179076 (16 seq.)
>W1711958469
NBWA01000015
Gammaproteobacteria
Pseudomonas putida [NBWA]
78010
77934
-
Gly
TCC
[ENA]
¡û
>w023274
AAXR01000012
Gammaproteobacteria
Pseudomonas putida GB-1 [AAXR]
168144
168220
+
Gly
TCC
[ENA]
¡û
>C08007792
CP000926
Gammaproteobacteria
Pseudomonas putida GB-1 [CP000926]
3854346
3854273
-
Gly
TCC
[Ensembl]
¡û
>WENV170018240
BARV01029908
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
143
219
+
Gly
TCC
[ENA]
¢þ
>C181020474
CP016634
Gammaproteobacteria
Pseudomonas putida IEC33019 [CP016634]
2386348
2386272
-
Gly
TCC
-
¡û
>C191010959
CP014062
Gammaproteobacteria
Pseudomonas monteilii FDAARGOS_171 [CP014062]
3733401
3733477
+
Gly
TCC
-
¡û
>W141571155
JIEX01000002
Gammaproteobacteria
Pseudomonas aeruginosa BWH053 [JIEX]
7592
7668
+
Gly
TCC
[ENA]
¡û
>W1910747905
MINF01000031
Gammaproteobacteria
Pseudomonas putida KH-20-11 [MINF]
2429517
2429593
+
Gly
TCC
[ENA]
¡û
>W11178032
AGCS01000010
Gammaproteobacteria
Pseudomonas putida B6-2 [AGCS]
603656
603732
+
Gly
TCC
[ENA]
¡û
>C161036499
CP011525
Gammaproteobacteria
Pseudomonas sp. JY-Q [CP011525]
2275303
2275379
+
Gly
TCC
[Ensembl]
¡û
>C161084500
CP015202
Gammaproteobacteria
Pseudomonas putida B6-2 [CP015202]
1780907
1780983
+
Gly
TCC
[Ensembl]
¡û
>W1610059626
BCBE01000060
Gammaproteobacteria
Pseudomonas sp. NBRC 111128 [BCBE]
18931
18855
-
Gly
TCC
[ENA]
¡û
>W1610060465
BCBU01000017
Gammaproteobacteria
Pseudomonas sp. NBRC 111144 [BCBU]
20760
20684
-
Gly
TCC
[ENA]
¡û
>C131016610
CP005976
Gammaproteobacteria
Pseudomonas putida H8234 [CP005976]
4320408
4320332
-
Gly
TCC
[Ensembl]
¡û
>W1710056749
BCBE01000060
Gammaproteobacteria
Pseudomonas sp. NBRC 111128 [BCBE]
18931
18855
-
Gly
TCC
[ENA]
¡û
>W1710057720
BCBU01000017
Gammaproteobacteria
Pseudomonas sp. NBRC 111144 [BCBU]
20760
20684
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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