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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179096 (50 seq.)
>W1710996480
LQBL01000030
Actinomycetota
Serinicoccus chungangensis [LQBL]
63278
63202
-
Ile
GAT
[ENA]
¡û
>W1711043863
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
634314
634240
-
Ile
GAT
[ENA]
¡û
>W1711074676
LSJT01000049
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
14635
14559
-
Ile
GAT
[ENA]
¡û
>W1711185724
LWNQ01000006
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
97294
97368
+
Ile
GAT
[ENA]
¡û
>W1711186222
LWOB01000020
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
1943
2017
+
Ile
GAT
[ENA]
¡û
>W1711186326
LWOD01000016
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
7345
7419
+
Ile
GAT
[ENA]
¡û
>W1711187478
LWPN01000048
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
11452
11528
+
Ile
GAT
[ENA]
¡û
>C171034679
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
2047359
2047283
-
Ile
GAT
-
¡û
>W131161622
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
1927830
1927754
-
Ile
GAT
[ENA]
¡û
>W131206265
ATFO01000002
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
485158
485232
+
Ile
GAT
[ENA]
¡û
>WENV180312709
OBJZ01000056
[OBJZ] human gut metagenome; fecal sample
99383
99457
+
Ile
GAT
[ENA]
¢þ
>WENV180312843
OBJZ01000396
[OBJZ] human gut metagenome; fecal sample
6320
6394
+
Ile
GAT
[ENA]
¢þ
>WENV180421599
OBVQ01010115
[OBVQ] human gut metagenome; faeces
145
219
+
Ile
GAT
[ENA]
¢þ
>WENV180444520
OBWZ01029817
[OBWZ] human gut metagenome; faeces
122
196
+
Ile
GAT
[ENA]
¢þ
>WENV180554515
OCJN01006668
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
114
40
-
Ile
GAT
[ENA]
¢þ
>WENV182812876
OJXV01000321
[OJXV] human gut metagenome; human gut
4699
4773
+
Ile
GAT
[ENA]
¢þ
>WENV182825569
OKCK01000626
[OKCK] human gut metagenome; human gut
542
616
+
Ile
GAT
[ENA]
¢þ
>WENV182831681
OKEG01000135
[OKEG] human gut metagenome; human gut
20163
20237
+
Ile
GAT
[ENA]
¢þ
>WENV182839069
OKGZ01001556
[OKGZ] human gut metagenome; human gut
613
687
+
Ile
GAT
[ENA]
¢þ
>WENV182845661
OKJE01000391
[OKJE] human gut metagenome; human gut
2047
1973
-
Ile
GAT
[ENA]
¢þ
>WENV182849745
OKKT01003006
[OKKT] human gut metagenome; human gut
429
355
-
Ile
GAT
[ENA]
¢þ
>WENV182855177
OKMY01000228
[OKMY] human gut metagenome; human gut
12106
12032
-
Ile
GAT
[ENA]
¢þ
>WENV183087994
OLJQ01002574
[OLJQ] human gut metagenome; human gut
479
553
+
Ile
GAT
[ENA]
¢þ
>WENV183511859
OMJG01006729
[OMJG] food metagenome; Cotija cheese
445
519
+
Ile
GAT
[ENA]
¢þ
>W141400457
JDRS01000043
Actinomycetota
Dermabacter hominis 1368 [JDRS]
439
365
-
Ile
GAT
[ENA]
¡û
>C181084654
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
610506
610432
-
Ile
GAT
-
¡û
>C181199712
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
3118118
3118192
+
Ile
GAT
-
¡û
>W09108388
ABTF01000003
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
125217
125291
+
Ile
GAT
[ENA]
¡û
>W1910321365
FSEE01000014
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
30932
30858
-
Ile
GAT
[ENA]
¡û
>W1910442497
FWFH01000091
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
12064
12138
+
Ile
GAT
[ENA]
¡û
>W1911596811
PNHL01000004
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
2865
2790
-
Ile
GAT
[ENA]
¡û
>W1911702222
QOCI01000003
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
194920
194994
+
Ile
GAT
[ENA]
¡û
>W1911726682
QSWH01000015
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
3220
3146
-
Ile
GAT
[ENA]
¡û
>W1911765330
QXCP01000001
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
120800
120874
+
Ile
GAT
[ENA]
¡û
>W1810187330
PKHM01000008
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
5647
5573
-
Ile
GAT
[ENA]
¡û
>W1810756803
QPGH01000044
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
103027
103101
+
Ile
GAT
[ENA]
¡û
>C151039171
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
141610
141686
+
Ile
GAT
[Ensembl]
¡û
>C151077148
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
479773
479697
-
Ile
GAT
-
¡û
>W1510021937
BCAK01000060
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
18066
18140
+
Ile
GAT
[ENA]
¡û
>C10101536
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
19009
19083
+
Ile
GAT
[Ensembl]
¡û
>W1511629588
LDCM01000001
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
876669
876593
-
Ile
GAT
[ENA]
¡û
>C161039593
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
25570
25644
+
Ile
GAT
[Ensembl]
¡û
>W1610069271
BCSI01000007
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
6945
6871
-
Ile
GAT
[ENA]
¡û
>W1610095068
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
459878
459952
+
Ile
GAT
[ENA]
¡û
>W121018126
AGSO01000011
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
225759
225685
-
Ile
GAT
[ENA]
¡û
>W1610851137
LQBL01000030
Actinomycetota
Serinicoccus chungangensis [LQBL]
63278
63202
-
Ile
GAT
[ENA]
¡û
>W1610885162
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
634314
634240
-
Ile
GAT
[ENA]
¡û
>W1610913981
LSJT01000049
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
14635
14559
-
Ile
GAT
[ENA]
¡û
>W1710066644
BCSI01000007
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
6945
6871
-
Ile
GAT
[ENA]
¡û
>W1710097863
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
459878
459952
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK