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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179136 (103 seq.)
>W1711027049
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
4728
4652
-
Val
GAC
[ENA]
¡û
>W1711027050
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
4613
4537
-
Val
GAC
[ENA]
¡û
>W1711326690
MBFW01000042
Gammaproteobacteria
Shewanella algae [MBFW]
584
508
-
Val
GAC
[ENA]
¡û
>W1711326691
MBFW01000042
Gammaproteobacteria
Shewanella algae [MBFW]
471
395
-
Val
GAC
[ENA]
¡û
>W1711360870
MDKA01000017
Gammaproteobacteria
Shewanella algae [MDKA]
27012
27088
+
Val
GAC
[ENA]
¡û
>W1711360871
MDKA01000017
Gammaproteobacteria
Shewanella algae [MDKA]
27100
27176
+
Val
GAC
[ENA]
¡û
>C019853
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2156148
2156072
-
Val
GAC
[Ensembl]
¡û
>C021974
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2404762
2404838
+
Val
GAC
[Ensembl]
¡û
>C021975
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2404887
2404963
+
Val
GAC
[Ensembl]
¡û
>w026348
ABAU01000112
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
385
307
-
Val
GAC
[ENA]
¡û
>WENV181322420
OFKR01006155
[OFKR] marine metagenome; sea ice
411
487
+
Val
GAC
[ENA]
¢þ
>WENV181323178
OFKW01019810
[OFKW] marine metagenome; sea ice
457
381
-
Val
GAC
[ENA]
¢þ
>W141223855
BAEO01000035
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
7831
7755
-
Val
GAC
[ENA]
¡û
>W141224045
BAES01000025
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
40400
40476
+
Val
GAC
[ENA]
¡û
>W141227809
BALL01000067
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
128
52
-
Val
GAC
[ENA]
¡û
>W141227947
BALO01000006
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
156460
156384
-
Val
GAC
[ENA]
¡û
>W141227948
BALO01000006
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
156347
156271
-
Val
GAC
[ENA]
¡û
>W141276191
JADP01000006
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
3494
3418
-
Val
GAC
[ENA]
¡û
>W141276192
JADP01000006
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
3381
3305
-
Val
GAC
[ENA]
¡û
>WENV183615103
OOEA01057202
[OOEA] marine metagenome; sea ice
180
104
-
Val
GAC
[ENA]
¢þ
>WENV183615552
OOEB01036886
[OOEB] marine metagenome; sea ice
343
267
-
Val
GAC
[ENA]
¢þ
>WENV183615897
OOEC01001746
[OOEC] marine metagenome; sea ice
1365
1441
+
Val
GAC
[ENA]
¢þ
>WENV183617012
OOEE01028660
[OOEE] marine metagenome; sea ice
627
703
+
Val
GAC
[ENA]
¢þ
>WENV183617450
OOEG01000107
[OOEG] marine metagenome; sea ice
8503
8579
+
Val
GAC
[ENA]
¢þ
>WENV183621387
OOFU01000096
[OOFU] marine metagenome; sea ice
12202
12278
+
Val
GAC
[ENA]
¢þ
>WENV183622647
OOFW01000742
[OOFW] marine metagenome; sea ice
4712
4788
+
Val
GAC
[ENA]
¢þ
>WENV183622667
OOFW01001007
[OOFW] marine metagenome; sea ice
100
24
-
Val
GAC
[ENA]
¢þ
>WENV183623109
OOFX01010964
[OOFX] marine metagenome; sea ice
217
141
-
Val
GAC
[ENA]
¢þ
>WENV183624778
OOGE01008135
[OOGE] marine metagenome; sea ice
339
263
-
Val
GAC
[ENA]
¢þ
>WENV183628342
OOGN01012597
[OOGN] marine metagenome; sea ice
429
353
-
Val
GAC
[ENA]
¢þ
>WENV183628522
OOGO01000547
[OOGO] marine metagenome; sea ice
1537
1461
-
Val
GAC
[ENA]
¢þ
>W09102817
AAIN01000031
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
5950
6026
+
Val
GAC
[ENA]
¡û
>W09103111
AAIV01000018
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
41303
41227
-
Val
GAC
[ENA]
¡û
>W09103112
AAIV01000018
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
41178
41102
-
Val
GAC
[ENA]
¡û
>W09103927
AALB01000036
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
19301
19225
-
Val
GAC
[ENA]
¡û
>W09103928
AALB01000036
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
19175
19099
-
Val
GAC
[ENA]
¡û
>C191015544
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
3944259
3944183
-
Val
GAC
-
¡û
>C191015545
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
3944146
3944070
-
Val
GAC
-
¡û
>C191107883
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
2722729
2722653
-
Val
GAC
-
¡û
>C191107884
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
2722617
2722541
-
Val
GAC
-
¡û
>C191117253
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2662954
2662878
-
Val
GAC
-
¡û
>C191117254
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2662829
2662753
-
Val
GAC
-
¡û
>C191117255
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2604271
2604195
-
Val
GAC
-
¡û
>C191173217
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4553765
4553841
+
Val
GAC
-
¡û
>C191185895
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2240788
2240712
-
Val
GAC
-
¡û
>C191205267
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4677566
4677490
-
Val
GAC
-
¡û
>C191205268
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4677451
4677375
-
Val
GAC
-
¡û
>C191205269
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
4604472
4604396
-
Val
GAC
-
¡û
>W141801953
JPEO01000002
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
107082
107158
+
Val
GAC
[ENA]
¡û
>W141801954
JPEO01000002
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
107178
107254
+
Val
GAC
[ENA]
¡û
>W143004856
BALL01000061
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
26570
26494
-
Val
GAC
[ENA]
¡û
>W1910617468
LIRM01000044
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
37235
37311
+
Val
GAC
[ENA]
¡û
>W1910617469
LIRM01000044
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
37348
37424
+
Val
GAC
[ENA]
¡û
>W1910645004
LVCY01000003
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
171476
171400
-
Val
GAC
[ENA]
¡û
>W1910645005
LVCY01000003
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
171363
171287
-
Val
GAC
[ENA]
¡û
>W1910645096
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
703106
703030
-
Val
GAC
[ENA]
¡û
>W1910645097
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
702993
702917
-
Val
GAC
[ENA]
¡û
>W1910645153
LVDK01000001
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
366213
366289
+
Val
GAC
[ENA]
¡û
>W1910645154
LVDK01000001
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
366326
366402
+
Val
GAC
[ENA]
¡û
>W1910645264
LVDU01000003
Gammaproteobacteria
Shewanella algae YHL [LVDU]
308697
308621
-
Val
GAC
[ENA]
¡û
>W1910645265
LVDU01000003
Gammaproteobacteria
Shewanella algae YHL [LVDU]
308584
308508
-
Val
GAC
[ENA]
¡û
>W1910927100
NIJK01000047
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
141462
141386
-
Val
GAC
[ENA]
¡û
>W1910927101
NIJK01000047
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
141374
141298
-
Val
GAC
[ENA]
¡û
>W1910927128
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
241663
241739
+
Val
GAC
[ENA]
¡û
>W1910927129
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
241776
241852
+
Val
GAC
[ENA]
¡û
>W1910927130
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
241889
241965
+
Val
GAC
[ENA]
¡û
>W1910927131
NIJL01000011
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
242002
242078
+
Val
GAC
[ENA]
¡û
>W1910927260
NIJM01000042
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
18579
18655
+
Val
GAC
[ENA]
¡û
>W1910927261
NIJM01000042
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
18694
18770
+
Val
GAC
[ENA]
¡û
>W1810157813
PJCD01000042
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
32803
32727
-
Val
GAC
[ENA]
¡û
>W1810157814
PJCD01000042
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
32678
32602
-
Val
GAC
[ENA]
¡û
>W1810157897
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
897634
897558
-
Val
GAC
[ENA]
¡û
>W1810157898
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
897519
897443
-
Val
GAC
[ENA]
¡û
>W1810157931
PJCF01000004
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
521813
521737
-
Val
GAC
[ENA]
¡û
>W1810585852
QFDC01000009
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
65277
65353
+
Val
GAC
[ENA]
¡û
>W1810585853
QFDC01000009
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
65390
65466
+
Val
GAC
[ENA]
¡û
>W1810671636
QJSY01000001
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
35424
35500
+
Val
GAC
[ENA]
¡û
>W1810671637
QJSY01000001
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
35539
35615
+
Val
GAC
[ENA]
¡û
>W1810786656
QRCS01000030
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
57474
57398
-
Val
GAC
[ENA]
¡û
>W1810786675
QRCS01000128
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
38
114
+
Val
GAC
[ENA]
¡û
>W1810786677
QRCS01000128
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
317
393
+
Val
GAC
[ENA]
¡û
>W1510077730
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
78566
78490
-
Val
GAC
[ENA]
¡û
>W1510077731
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
78453
78377
-
Val
GAC
[ENA]
¡û
>W1511306494
JPMA01000003
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
157326
157250
-
Val
GAC
[ENA]
¡û
>W1511477898
JWGX01000004
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
119922
119998
+
Val
GAC
[ENA]
¡û
>W1511477899
JWGX01000004
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
120010
120086
+
Val
GAC
[ENA]
¡û
>W1610042093
BAXN01000012
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
20074
20150
+
Val
GAC
[ENA]
¡û
>W1610042094
BAXN01000012
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
20187
20263
+
Val
GAC
[ENA]
¡û
>W1610077862
BCZT01000026
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
20096
20172
+
Val
GAC
[ENA]
¡û
>W1610077863
BCZT01000026
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
20209
20285
+
Val
GAC
[ENA]
¡û
>C131007696
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
2301298
2301222
-
Val
GAC
-
¡û
>W1610875161
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
4728
4652
-
Val
GAC
[ENA]
¡û
>W1610875162
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
4613
4537
-
Val
GAC
[ENA]
¡û
>W1710039187
BAXN01000012
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
20074
20150
+
Val
GAC
[ENA]
¡û
>W1710039188
BAXN01000012
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
20187
20263
+
Val
GAC
[ENA]
¡û
>W1710075420
BCZT01000026
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
20096
20172
+
Val
GAC
[ENA]
¡û
>W1710075421
BCZT01000026
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
20209
20285
+
Val
GAC
[ENA]
¡û
>W1710692520
JZWJ01000206
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
2319
2395
+
Val
GAC
[ENA]
¡û
>W1710692521
JZWJ01000211
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
21946
22022
+
Val
GAC
[ENA]
¡û
>W1710692522
JZWJ01000211
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
22060
22136
+
Val
GAC
[ENA]
¡û
>W1710706668
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4113969
4113893
-
Val
GAC
[ENA]
¡û
>W1710706669
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4113855
4113779
-
Val
GAC
[ENA]
¡û
>W1710706670
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
4068066
4067990
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK