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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179137 (38 seq.)
>W1711326702
MBFW01000053
Gammaproteobacteria
Shewanella algae [MBFW]
34600
34524
-
Pro
GGG
[ENA]
¡û
>W1711360877
MDKA01000024
Gammaproteobacteria
Shewanella algae [MDKA]
65492
65416
-
Pro
GGG
[ENA]
¡û
>C020705
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
2970037
2969961
-
Pro
GGG
[Ensembl]
¡û
>w026310
ABAU01000048
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
5743
5821
+
Pro
GGG
[ENA]
¡û
>W141227799
BALL01000048
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
17662
17738
+
Pro
GGG
[ENA]
¡û
>W141227974
BALO01000034
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
30117
30041
-
Pro
GGG
[ENA]
¡û
>C08008794
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
3146074
3146001
-
Pro
GGG
[Ensembl]
¡û
>W141276222
JADP01000028
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
53423
53347
-
Pro
GGG
[ENA]
¡û
>WENV170921395
MDTG01013455
[MDTG] marine metagenome; seawater
497
573
+
Pro
GGG
[ENA]
¢þ
>C191015525
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4404963
4404887
-
Pro
GGG
-
¡û
>C191017660
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
1376889
1376813
-
Pro
GGG
-
¡û
>C191107868
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3159987
3159911
-
Pro
GGG
-
¡û
>C191156027
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
3810901
3810825
-
Pro
GGG
-
¡û
>C191205297
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
42067
41991
-
Pro
GGG
-
¡û
>W1910617454
LIRM01000038
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
17522
17598
+
Pro
GGG
[ENA]
¡û
>W1910645046
LVCY01000038
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
17834
17910
+
Pro
GGG
[ENA]
¡û
>W1910645082
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
1145601
1145525
-
Pro
GGG
[ENA]
¡û
>W1910645213
LVDK01000021
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
27118
27042
-
Pro
GGG
[ENA]
¡û
>W1910645268
LVDU01000004
Gammaproteobacteria
Shewanella algae YHL [LVDU]
17600
17676
+
Pro
GGG
[ENA]
¡û
>W1910905588
NGVS01000025
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
96495
96419
-
Pro
GGG
[ENA]
¡û
>W1910927025
NIJK01000007
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
32949
33025
+
Pro
GGG
[ENA]
¡û
>W1910927178
NIJL01000029
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
76276
76200
-
Pro
GGG
[ENA]
¡û
>W1910927265
NIJM01000050
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
6125
6049
-
Pro
GGG
[ENA]
¡û
>W1911581932
PGVH01000040
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
117480
117404
-
Pro
GGG
[ENA]
¡û
>W1911710079
QPQT01000016
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
22308
22232
-
Pro
GGG
[ENA]
¡û
>W1911809512
QYYH01000182
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
7054
7130
+
Pro
GGG
[ENA]
¡û
>W1810585891
QFDC01000037
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
27832
27756
-
Pro
GGG
[ENA]
¡û
>W1810671671
QJSY01000013
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
13607
13531
-
Pro
GGG
[ENA]
¡û
>W1810786647
QRCS01000027
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
7877
7953
+
Pro
GGG
[ENA]
¡û
>W1510077716
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
537800
537724
-
Pro
GGG
[ENA]
¡û
>W1511306541
JPMA01000020
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
53536
53460
-
Pro
GGG
[ENA]
¡û
>W1511477928
JWGX01000016
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
123340
123416
+
Pro
GGG
[ENA]
¡û
>W1610042115
BAXN01000033
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
17913
17989
+
Pro
GGG
[ENA]
¡û
>W1610077872
BCZT01000039
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
28939
28863
-
Pro
GGG
[ENA]
¡û
>W1710039209
BAXN01000033
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
17913
17989
+
Pro
GGG
[ENA]
¡û
>W1710075430
BCZT01000039
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
28939
28863
-
Pro
GGG
[ENA]
¡û
>W1710692505
JZWJ01000146
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
1559
1483
-
Pro
GGG
[ENA]
¡û
>W1710706627
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
3879627
3879703
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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