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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179138 (88 seq.)
>W1711326650
MBFW01000008
Gammaproteobacteria
Shewanella algae [MBFW]
35806
35882
+
Met
CAT
[ENA]
¡û
>W1711326654
MBFW01000008
Gammaproteobacteria
Shewanella algae [MBFW]
36230
36306
+
Met
CAT
[ENA]
¡û
>W131225176
AUDJ01000007
Gammaproteobacteria
Ferrimonas kyonanensis DSM 18153 [AUDJ]
326301
326377
+
Met
CAT
[ENA]
¡û
>C019823
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
3078022
3077946
-
Met
CAT
[Ensembl]
¡û
>C020670
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818500
3818424
-
Met
CAT
[Ensembl]
¡û
>C020674
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818007
3817931
-
Met
CAT
[Ensembl]
¡û
>C022704
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
3457530
3457454
-
Met
CAT
[Ensembl]
¡û
>C022708
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
3457056
3456980
-
Met
CAT
[Ensembl]
¡û
>C022919
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229540
1229616
+
Met
CAT
[Ensembl]
¡û
>C023282
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3313189
3313113
-
Met
CAT
[Ensembl]
¡û
>w026316
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17608
17686
+
Met
CAT
[ENA]
¡û
>w026312
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17115
17193
+
Met
CAT
[ENA]
¡û
>WENV181122311
OEFM01000100
[OEFM] marine metagenome; ENVO:00000569 for seawater
77
1
-
Met
CAT
[ENA]
¢þ
>W141227793
BALL01000044
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
36468
36544
+
Met
CAT
[ENA]
¡û
>W141227797
BALL01000044
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
36892
36968
+
Met
CAT
[ENA]
¡û
>W141227977
BALO01000041
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
37465
37541
+
Met
CAT
[ENA]
¡û
>W141227993
BALO01000081
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
3067
2991
-
Met
CAT
[ENA]
¡û
>C08008759
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4054190
4054117
-
Met
CAT
[Ensembl]
¡û
>C08008763
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053697
4053624
-
Met
CAT
[Ensembl]
¡û
>W141276215
JADP01000023
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
305
229
-
Met
CAT
[ENA]
¡û
>WENV170820681
MDSY01008778
[MDSY] marine metagenome; seawater
8430
8354
-
Met
CAT
[ENA]
¢þ
>C181061292
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1088078
1088154
+
Met
CAT
-
¡û
>C181061296
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1088575
1088651
+
Met
CAT
-
¡û
>C191015569
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
402934
402858
-
Met
CAT
-
¡û
>C191015573
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
402510
402434
-
Met
CAT
-
¡û
>C191017626
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2706981
2706905
-
Met
CAT
-
¡û
>C191107841
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4032032
4031956
-
Met
CAT
-
¡û
>C191107845
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4031608
4031532
-
Met
CAT
-
¡û
>C191155906
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
3171648
3171572
-
Met
CAT
-
¡û
>C191155910
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
3171218
3171142
-
Met
CAT
-
¡û
>C191187177
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
1024867
1024943
+
Met
CAT
-
¡û
>C191187181
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
1025365
1025441
+
Met
CAT
-
¡û
>C191205217
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242320
3242396
+
Met
CAT
-
¡û
>C191205221
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242756
3242832
+
Met
CAT
-
¡û
>W09104520
AALS01000085
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
127
203
+
Met
CAT
[ENA]
¡û
>W09104524
AALS01000085
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
601
677
+
Met
CAT
[ENA]
¡û
>W1910617444
LIRM01000023
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
30837
30913
+
Met
CAT
[ENA]
¡û
>W1910617448
LIRM01000023
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
31261
31337
+
Met
CAT
[ENA]
¡û
>W1910645012
LVCY01000005
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
39975
39899
-
Met
CAT
[ENA]
¡û
>W1910645016
LVCY01000005
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
39551
39475
-
Met
CAT
[ENA]
¡û
>W1910645129
LVDH01000007
Gammaproteobacteria
Shewanella algae AC [LVDH]
171877
171801
-
Met
CAT
[ENA]
¡û
>W1910645133
LVDH01000007
Gammaproteobacteria
Shewanella algae AC [LVDH]
171453
171377
-
Met
CAT
[ENA]
¡û
>W1910645214
LVDK01000022
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
8382
8306
-
Met
CAT
[ENA]
¡û
>W1910645218
LVDK01000022
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
7958
7882
-
Met
CAT
[ENA]
¡û
>W1910645239
LVDU01000001
Gammaproteobacteria
Shewanella algae YHL [LVDU]
213241
213165
-
Met
CAT
[ENA]
¡û
>W1910645243
LVDU01000001
Gammaproteobacteria
Shewanella algae YHL [LVDU]
212817
212741
-
Met
CAT
[ENA]
¡û
>W1910905530
NGVS01000009
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
33876
33952
+
Met
CAT
[ENA]
¡û
>W1910905534
NGVS01000009
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
34301
34377
+
Met
CAT
[ENA]
¡û
>W1910927071
NIJK01000033
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
55115
55191
+
Met
CAT
[ENA]
¡û
>W1910927075
NIJK01000033
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
55539
55615
+
Met
CAT
[ENA]
¡û
>W1910927189
NIJL01000030
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
152641
152717
+
Met
CAT
[ENA]
¡û
>W1910927193
NIJL01000030
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
153065
153141
+
Met
CAT
[ENA]
¡û
>W1911581966
PGVH01000056
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
47703
47627
-
Met
CAT
[ENA]
¡û
>W1911581970
PGVH01000056
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
47289
47213
-
Met
CAT
[ENA]
¡û
>W1911687816
QLIS01000007
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
96482
96558
+
Met
CAT
[ENA]
¡û
>W1911710050
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
209846
209770
-
Met
CAT
[ENA]
¡û
>W1911710054
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
209186
209110
-
Met
CAT
[ENA]
¡û
>W1911812290
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
201090
201014
-
Met
CAT
[ENA]
¡û
>W1911812294
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
200661
200585
-
Met
CAT
[ENA]
¡û
>W1810585860
QFDC01000015
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
87522
87598
+
Met
CAT
[ENA]
¡û
>W1810585864
QFDC01000015
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
87946
88022
+
Met
CAT
[ENA]
¡û
>W1810671721
QJSY01000070
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
1428
1352
-
Met
CAT
[ENA]
¡û
>W1810671725
QJSY01000070
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
1005
929
-
Met
CAT
[ENA]
¡û
>W1510077737
CDQH01000020
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
141163
141087
-
Met
CAT
[ENA]
¡û
>W1510077741
CDQH01000020
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
140739
140663
-
Met
CAT
[ENA]
¡û
>W1511302119
JPII01000016
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
27109
27185
+
Met
CAT
[ENA]
¡û
>W1511302123
JPII01000016
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
27604
27680
+
Met
CAT
[ENA]
¡û
>W1511306513
JPMA01000008
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
150
226
+
Met
CAT
[ENA]
¡û
>W1511306532
JPMA01000015
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
119729
119805
+
Met
CAT
[ENA]
¡û
>W1511366741
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
26213
26289
+
Met
CAT
[ENA]
¡û
>W1511366745
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
26711
26787
+
Met
CAT
[ENA]
¡û
>W1511366748
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
27106
27182
+
Met
CAT
[ENA]
¡û
>W1511477963
JWGX01000061
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
31643
31719
+
Met
CAT
[ENA]
¡û
>W1511477967
JWGX01000061
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
32067
32143
+
Met
CAT
[ENA]
¡û
>W1610042116
BAXN01000034
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
227
151
-
Met
CAT
[ENA]
¡û
>W1610042130
BAXN01000047
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
8182
8106
-
Met
CAT
[ENA]
¡û
>W1610077873
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3448
3372
-
Met
CAT
[ENA]
¡û
>W1610077877
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3024
2948
-
Met
CAT
[ENA]
¡û
>W1710039210
BAXN01000034
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
227
151
-
Met
CAT
[ENA]
¡û
>W1710039224
BAXN01000047
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
8182
8106
-
Met
CAT
[ENA]
¡û
>W1710075431
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3448
3372
-
Met
CAT
[ENA]
¡û
>W1710075435
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3024
2948
-
Met
CAT
[ENA]
¡û
>W1710519071
FNEM01000004
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
335121
335197
+
Met
CAT
[ENA]
¡û
>W1710519073
FNEM01000004
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
335460
335536
+
Met
CAT
[ENA]
¡û
>W1710692488
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
97462
97538
+
Met
CAT
[ENA]
¡û
>W1710692492
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
97896
97972
+
Met
CAT
[ENA]
¡û
>W1710706691
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384873
384797
-
Met
CAT
[ENA]
¡û
>W1710706695
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384439
384363
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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