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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179140 (101 seq.)
>W1711174358
LWED01000068
Gammaproteobacteria
Shewanella baltica [LWED]
132003
132079
+
Arg
CCG
[ENA]
¡û
>W1711326703
MBFW01000056
Gammaproteobacteria
Shewanella algae [MBFW]
124807
124883
+
Arg
CCG
[ENA]
¡û
>W1711360883
MDKA01000030
Gammaproteobacteria
Shewanella algae [MDKA]
184005
184081
+
Arg
CCG
[ENA]
¡û
>W1711621632
MPDG02000008
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
14860
14784
-
Arg
CCG
[ENA]
¡û
>W1711934445
NAJR01000012
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
135788
135864
+
Arg
CCG
[ENA]
¡û
>W1712080480
NGZL01000089
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
11926
12002
+
Arg
CCG
[ENA]
¡û
>WENV013465
AACY020370749
Marine microbial communities from Global Ocean Sampling (GOS)
64141
64217
+
Arg
CCG
[ENA]
>C020663
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
4708802
4708726
-
Arg
CCG
[Ensembl]
¡û
>C020913
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
476436
476512
+
Arg
CCG
[Ensembl]
¡û
>C022207
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
416452
416528
+
Arg
CCG
[Ensembl]
¡û
>C022310
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
405888
405964
+
Arg
CCG
[Ensembl]
¡û
>C022460
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
4345421
4345345
-
Arg
CCG
[Ensembl]
¡û
>C022566
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
4276956
4276880
-
Arg
CCG
[Ensembl]
¡û
>C022964
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
4512428
4512352
-
Arg
CCG
[Ensembl]
¡û
>C023271
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
4191510
4191434
-
Arg
CCG
[Ensembl]
¡û
>w026287
ABAU01000004
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
58398
58325
-
Arg
CCG
[ENA]
¡û
>w024869
AAZC01000002
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
123215
123291
+
Arg
CCG
[ENA]
¡û
>w022849
AAWY01000009
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
76050
75977
-
Arg
CCG
[ENA]
¡û
>w018607
AATK01000002
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
229388
229464
+
Arg
CCG
[ENA]
¡û
>w007643
AAIU01000001
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
258802
258878
+
Arg
CCG
[ENA]
¡û
>WENV180310928
OBJT01059977
[OBJT] soil metagenome; soil
432
508
+
Arg
CCG
[ENA]
¢þ
>W141171175
AXZL01000005
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
11414
11338
-
Arg
CCG
[ENA]
¡û
>C08008645
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
4762211
4762138
-
Arg
CCG
[Ensembl]
¡û
>W141227800
BALL01000053
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
18912
18988
+
Arg
CCG
[ENA]
¡û
>W141227870
BALM01000050
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
7432
7508
+
Arg
CCG
[ENA]
¡û
>W141227888
BALN01000010
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
227
151
-
Arg
CCG
[ENA]
¡û
>W141227953
BALO01000010
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
14429
14353
-
Arg
CCG
[ENA]
¡û
>C08008749
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4861398
4861325
-
Arg
CCG
[Ensembl]
¡û
>W141276193
JADP01000007
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
202848
202924
+
Arg
CCG
[ENA]
¡û
>W141277733
JAEU01000276
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
1198
1122
-
Arg
CCG
[ENA]
¡û
>WENV020781
AACY020558280
Marine microbial communities from Global Ocean Sampling (GOS)
176
100
-
Arg
CCG
[ENA]
>C181016801
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
1023586
1023662
+
Arg
CCG
-
¡û
>C181057551
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4079286
4079362
+
Arg
CCG
-
¡û
>C181062975
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
4350403
4350327
-
Arg
CCG
-
¡û
>C181075083
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
1330283
1330207
-
Arg
CCG
-
¡û
>C181164555
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
1431359
1431283
-
Arg
CCG
-
¡û
>C181165398
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3025865
3025941
+
Arg
CCG
-
¡û
>C181167871
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
357913
357989
+
Arg
CCG
-
¡û
>C191015564
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
1166544
1166468
-
Arg
CCG
-
¡û
>W141520112
JGVI01000094
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
139340
139416
+
Arg
CCG
[ENA]
¡û
>C191107837
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4822349
4822273
-
Arg
CCG
-
¡û
>C191155869
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
534408
534484
+
Arg
CCG
-
¡û
>C191155955
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
722719
722795
+
Arg
CCG
-
¡û
>C191187157
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
26681
26605
-
Arg
CCG
-
¡û
>C191205207
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
2499992
2500068
+
Arg
CCG
-
¡û
>C191206455
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
4527291
4527215
-
Arg
CCG
-
¡û
>W09102856
AAIO01000001
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
165736
165660
-
Arg
CCG
[ENA]
¡û
>W09103905
AALB01000004
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
68810
68734
-
Arg
CCG
[ENA]
¡û
>W09104034
AALH01000015
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
40014
40090
+
Arg
CCG
[ENA]
¡û
>W09104327
AALN01000089
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
8838
8762
-
Arg
CCG
[ENA]
¡û
>W09104577
AALX01000005
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
148067
148143
+
Arg
CCG
[ENA]
¡û
>W141802023
JPEO01000024
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
43869
43945
+
Arg
CCG
[ENA]
¡û
>C09109196
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
4662405
4662329
-
Arg
CCG
[Ensembl]
¡û
>W1910617491
LIRM01000077
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
687
611
-
Arg
CCG
[ENA]
¡û
>W1910645022
LVCY01000019
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
78891
78967
+
Arg
CCG
[ENA]
¡û
>W1910645140
LVDH01000016
Gammaproteobacteria
Shewanella algae AC [LVDH]
12579
12503
-
Arg
CCG
[ENA]
¡û
>W1910645180
LVDK01000003
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
14582
14506
-
Arg
CCG
[ENA]
¡û
>W1910645297
LVDU01000010
Gammaproteobacteria
Shewanella algae YHL [LVDU]
14656
14580
-
Arg
CCG
[ENA]
¡û
>W1910905547
NGVS01000014
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
369087
369163
+
Arg
CCG
[ENA]
¡û
>W1910913789
NHRI01000013
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
139818
139894
+
Arg
CCG
[ENA]
¡û
>W1910927077
NIJK01000037
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
24596
24672
+
Arg
CCG
[ENA]
¡û
>W1910927206
NIJL01000036
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
436212
436288
+
Arg
CCG
[ENA]
¡û
>W1910927266
NIJM01000054
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
28009
28085
+
Arg
CCG
[ENA]
¡û
>W1911581890
PGVH01000007
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
206969
206893
-
Arg
CCG
[ENA]
¡û
>W1911809487
QYYH01000064
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
23821
23897
+
Arg
CCG
[ENA]
¡û
>W1911812325
QZEI01000023
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
11594
11670
+
Arg
CCG
[ENA]
¡û
>W1810073353
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
1862474
1862550
+
Arg
CCG
[ENA]
¡û
>W1810423049
PYSG01000003
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
26580
26504
-
Arg
CCG
[ENA]
¡û
>W1810585826
QFDC01000001
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
272091
272015
-
Arg
CCG
[ENA]
¡û
>W1810587719
QFLG01000005
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
13547
13471
-
Arg
CCG
[ENA]
¡û
>W1810671701
QJSY01000035
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
28049
28125
+
Arg
CCG
[ENA]
¡û
>W1810721572
QNSC01000012
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
114877
114801
-
Arg
CCG
[ENA]
¡û
>W1510077745
CDQH01000025
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
48409
48333
-
Arg
CCG
[ENA]
¡û
>W10119068
ADVH01000023
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
14858
14782
-
Arg
CCG
[ENA]
¡û
>W10126078
AECY01000013
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
131449
131525
+
Arg
CCG
[ENA]
¡û
>W10126428
AEDE01000010
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
131621
131697
+
Arg
CCG
[ENA]
¡û
>W1511306507
JPMA01000006
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
58347
58271
-
Arg
CCG
[ENA]
¡û
>C11119367
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
455965
456041
+
Arg
CCG
[Ensembl]
¡û
>C11119509
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
4808143
4808067
-
Arg
CCG
[Ensembl]
¡û
>C11119604
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4803327
4803251
-
Arg
CCG
[Ensembl]
¡û
>W1511403525
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1073437
1073513
+
Arg
CCG
[ENA]
¡û
>C11121542
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
4107176
4107100
-
Arg
CCG
[Ensembl]
¡û
>W11125240
ADVH01000023
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
14858
14782
-
Arg
CCG
[ENA]
¡û
>W1511477959
JWGX01000045
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
47518
47594
+
Arg
CCG
[ENA]
¡û
>W11133339
AECY01000013
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
131449
131525
+
Arg
CCG
[ENA]
¡û
>W11133689
AEDE01000010
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
131621
131697
+
Arg
CCG
[ENA]
¡û
>W11169932
AFOZ01000044
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
12908
12832
-
Arg
CCG
[ENA]
¡û
>W11178426
AGEX01000002
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
16587
16511
-
Arg
CCG
[ENA]
¡û
>W121103315
AKZL01000025
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
51499
51575
+
Arg
CCG
[ENA]
¡û
>W1610042077
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212470
212546
+
Arg
CCG
[ENA]
¡û
>W1610072099
BCUO01000018
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
14975
14899
-
Arg
CCG
[ENA]
¡û
>W1610077881
BCZT01000075
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
4999
5075
+
Arg
CCG
[ENA]
¡û
>W1610617905
LGYY01000262
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
18410
18486
+
Arg
CCG
[ENA]
¡û
>W1610982671
LWED01000068
Gammaproteobacteria
Shewanella baltica [LWED]
132003
132079
+
Arg
CCG
[ENA]
¡û
>W1710039171
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212470
212546
+
Arg
CCG
[ENA]
¡û
>W1710069301
BCUO01000018
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
14975
14899
-
Arg
CCG
[ENA]
¡û
>W1710075439
BCZT01000075
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
4999
5075
+
Arg
CCG
[ENA]
¡û
>W1710597947
FTNN01000013
Gammaproteobacteria
Shewanella morhuae [FTNN]
14799
14723
-
Arg
CCG
[ENA]
¡û
>W1710692450
JZWJ01000058
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
168837
168913
+
Arg
CCG
[ENA]
¡û
>W1710706610
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
2186187
2186263
+
Arg
CCG
[ENA]
¡û
>W1710744080
LGYY01000262
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
18410
18486
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK