This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179148 (27 seq.)
>W1711135082
LUYN01000046
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
2332
2256
-
Ile
GAT
[ENA]
¡û
>C171067763
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
1396739
1396815
+
Ile
GAT
-
¡û
>C171067779
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
3427012
3426936
-
Ile
GAT
-
¡û
>C171067788
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2616786
2616710
-
Ile
GAT
-
¡û
>C171110782
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
1166180
1166104
-
Ile
GAT
-
¡û
>C171110788
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
581884
581808
-
Ile
GAT
-
¡û
>WENV181167627
OEIU01051405
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
763
687
-
Ile
GAT
[ENA]
¢þ
>WENV181844159
OGVV01015177
[OGVV] freshwater metagenome; freshwater
418
494
+
Ile
GAT
[ENA]
¢þ
>W141189659
AYNO01000221
Alphaproteobacteria
Rhodobacter sp. CACIA14H1 [AYNO]
2010
2086
+
Ile
GAT
[ENA]
¡û
>WENV170681031
LFEF01044822
[LFEF] freshwater metagenome; waterbloom
311
387
+
Ile
GAT
[ENA]
¢þ
>W1911245347
NSJZ01000042
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
3531
3455
-
Ile
GAT
[ENA]
¡û
>W1810195579
PKRQ01000028
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
3594
3518
-
Ile
GAT
[ENA]
¡û
>W1810672442
QJTK01000037
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
1848
1924
+
Ile
GAT
[ENA]
¡û
>W1511348671
JRKP01000161
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
2091
2167
+
Ile
GAT
[ENA]
¡û
>W1511348712
JRKQ01000154
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
3718
3642
-
Ile
GAT
[ENA]
¡û
>W1511348735
JRKR01000028
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
8074
7998
-
Ile
GAT
[ENA]
¡û
>W1511348805
JRKS01000111
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
3716
3640
-
Ile
GAT
[ENA]
¡û
>W1511348850
JRKT01000118
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
2092
2168
+
Ile
GAT
[ENA]
¡û
>W1610081511
BDDO01000048
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
1630
1706
+
Ile
GAT
[ENA]
¡û
>W1610946202
LUYN01000046
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
2332
2256
-
Ile
GAT
[ENA]
¡û
>W1710080162
BDDO01000048
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
1630
1706
+
Ile
GAT
[ENA]
¡û
>W1710521197
FNGE01000043
Alphaproteobacteria
Paracoccus chinensis [FNGE]
3668
3592
-
Ile
GAT
[ENA]
¡û
>W1710528234
FNNA01000013
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
2091
2167
+
Ile
GAT
[ENA]
¡û
>W1710540956
FNXG01000003
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
3707
3631
-
Ile
GAT
[ENA]
¡û
>W1710540965
FNXG01000005
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
3707
3631
-
Ile
GAT
[ENA]
¡û
>W1710540970
FNXG01000014
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
7551
7475
-
Ile
GAT
[ENA]
¡û
>W1710592395
FRCK01000021
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
3747
3671
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK