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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17915 (66 seq.)
>W1710995931
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
561958
562048
+
Ser
GGA
[ENA]
¡û
>W1711710491
MSZN01000005
Betaproteobacteria
Alcaligenes faecalis [MSZN]
131078
130988
-
Ser
GGA
[ENA]
¡û
>W1711710589
MSZP01000002
Betaproteobacteria
Alcaligenes faecalis [MSZP]
662685
662775
+
Ser
GGA
[ENA]
¡û
>W1711710668
MSZQ01000012
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
49301
49391
+
Ser
GGA
[ENA]
¡û
>W1711710731
MSZR01000029
Betaproteobacteria
Alcaligenes faecalis [MSZR]
25790
25880
+
Ser
GGA
[ENA]
¡û
>W1711711905
MTBI01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
234801
234711
-
Ser
GGA
[ENA]
¡û
>C171115521
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3318475
3318385
-
Ser
GGA
-
¡û
>W131051777
AMXV01000034
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
94614
94704
+
Ser
GGA
[ENA]
¡û
>W131223071
AUBT01000012
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
11468
11378
-
Ser
GGA
[ENA]
¡û
>W141104449
AVOG02000069
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
42628
42538
-
Ser
GGA
[ENA]
¡û
>W141139303
AWNL01000040
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
45080
45170
+
Ser
GGA
[ENA]
¡û
>W141237733
BBJQ01000007
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
86111
86021
-
Ser
GGA
[ENA]
¡û
>WENV183727870
PJTP01002080
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1272
1362
+
Ser
GGA
[ENA]
¢þ
>WENV183739461
PJUE01020141
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
652
562
-
Ser
GGA
[ENA]
¢þ
>WENV183740509
PJUF01002927
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4286
4196
-
Ser
GGA
[ENA]
¢þ
>WENV183746334
POVV01030046
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
449
359
-
Ser
GGA
[ENA]
¢þ
>WENV170260433
CEQZ01035156
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
459
369
-
Ser
GGA
[ENA]
¢þ
>WENV170620491
FUWD013032733
[FUWD] metagenome; unknown
228
318
+
Ser
GGA
[ENA]
¢þ
>WENV170628635
FUWD013250185
[FUWD] metagenome; unknown
228
318
+
Ser
GGA
[ENA]
¢þ
>WENV170645920
JQGF01000587
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
3677
3767
+
Ser
GGA
[ENA]
¢þ
>WENV170655116
JTFN01005683
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1485
1395
-
Ser
GGA
[ENA]
¢þ
>WENV170655644
JTFN01054307
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2289
2199
-
Ser
GGA
[ENA]
¢þ
>WENV170656195
JTFO01003719
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
92
2
-
Ser
GGA
[ENA]
¢þ
>WENV170656271
JTFO01007814
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
2097
2187
+
Ser
GGA
[ENA]
¢þ
>WENV170656663
JTFO01031331
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
11
101
+
Ser
GGA
[ENA]
¢þ
>WENV170657410
JTFO01143755
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
11
101
+
Ser
GGA
[ENA]
¢þ
>WENV170706507
LNAP01003733
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3075
2985
-
Ser
GGA
[ENA]
¢þ
>C181034350
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
3733048
3732958
-
Ser
GGA
-
¡û
>C181053240
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
3368329
3368239
-
Ser
GGA
-
¡û
>C181088598
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3055623
3055533
-
Ser
GGA
-
¡û
>C181169409
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
3778838
3778928
+
Ser
GGA
-
¡û
>C191012239
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3890986
3890896
-
Ser
GGA
-
¡û
>C191085277
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3615313
3615223
-
Ser
GGA
-
¡û
>C191091178
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1848702
1848612
-
Ser
GGA
-
¡û
>C191149664
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1163958
1163868
-
Ser
GGA
-
¡û
>W1910646089
LWKV01000004
Betaproteobacteria
Achromobacter sp. HZ01 [LWKV]
72227
72137
-
Ser
GGA
[ENA]
¡û
>W1910890541
NEVI01000001
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
345061
345151
+
Ser
GGA
[ENA]
¡û
>W1910890633
NEVK01000001
Betaproteobacteria
Bordetella genomosp. 7 7 AU18089 [NEVK]
399237
399327
+
Ser
GGA
[ENA]
¡û
>W1910927805
NIQA01000001
Betaproteobacteria
Pusillimonas sp. T2 [NIQA]
513855
513765
-
Ser
GGA
[ENA]
¡û
>W1911180890
NQOU01000001
Betaproteobacteria
Neopusillimonas maritima 17-4A [NQOU]
866678
866588
-
Ser
GGA
[ENA]
¡û
>W1911192788
NQYH01000001
Betaproteobacteria
Neopusillimonas maritima L52-1-41 [NQYH]
283284
283194
-
Ser
GGA
[ENA]
¡û
>W1810062087
PDNV01000003
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
103974
104064
+
Ser
GGA
[ENA]
¡û
>W1810222124
POQS01000009
Betaproteobacteria
Achromobacter pulmonis ANB-1 [POQS]
178405
178495
+
Ser
GGA
[ENA]
¡û
>W1810583906
QEXO01000003
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
82736
82646
-
Ser
GGA
[ENA]
¡û
>W1810759293
QPJH01000007
Betaproteobacteria
Pusillimonas sp. EA3 [QPJH]
65661
65571
-
Ser
GGA
[ENA]
¡û
>SRA1052423
SRR035098.199560
454 Sequencing (SRP001819)
228
318
+
Ser
GGA
[SRA]
>SRA1053023
SRR035098.320684
454 Sequencing (SRP001819)
26
116
+
Ser
GGA
[SRA]
>W1511321017
JQCV01000003
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
415716
415806
+
Ser
GGA
[ENA]
¡û
>W1511537439
JZBR01000001
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
631582
631672
+
Ser
GGA
[ENA]
¡û
>C161051355
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3094807
3094897
+
Ser
GGA
[Ensembl]
¡û
>C161109104
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
722194
722104
-
Ser
GGA
[Ensembl]
¡û
>W121091203
AKMR01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
37871
37781
-
Ser
GGA
[ENA]
¡û
>C131005661
CP003733
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii [ex Strigomonas [CP003733]
17364
17274
-
Ser
GGA
[Ensembl]
¡û
>C131007378
CP003807
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii TCC012E [CP003807]
666472
666382
-
Ser
GGA
[Ensembl]
¡û
>W1610447550
FKBR01000033
Betaproteobacteria
Bordetella trematum [FKBR]
169444
169534
+
Ser
GGA
[ENA]
¡û
>W1610447628
FKBT01000014
Betaproteobacteria
Bordetella trematum [FKBT]
170812
170902
+
Ser
GGA
[ENA]
¡û
>C131007209
CP003803
Betaproteobacteria
Candidatus Kinetoplastibacterium desouzaii TCC079E [CP003803]
681558
681468
-
Ser
GGA
[Ensembl]
¡û
>C131007252
CP003804
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii TCC036E [CP003804]
672919
672829
-
Ser
GGA
[Ensembl]
¡û
>C131007294
CP003805
Betaproteobacteria
Candidatus Kinetoplastibacterium oncopeltii TCC290E [CP003805]
660930
660840
-
Ser
GGA
[Ensembl]
¡û
>C131007336
CP003806
Betaproteobacteria
Candidatus Kinetoplastibacterium galatii TCC219 [CP003806]
668532
668442
-
Ser
GGA
[Ensembl]
¡û
>C131010826
CP003978
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii [ex Angomonas deanei [CP003978]
483824
483734
-
Ser
GGA
[Ensembl]
¡û
>W1610850588
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
561958
562048
+
Ser
GGA
[ENA]
¡û
>W1610921517
LSUO01000012
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
43207
43117
-
Ser
GGA
[ENA]
¡û
>W1710447178
FKBR01000033
Betaproteobacteria
Bordetella trematum [FKBR]
169444
169534
+
Ser
GGA
[ENA]
¡û
>W1710447256
FKBT01000014
Betaproteobacteria
Bordetella trematum [FKBT]
170812
170902
+
Ser
GGA
[ENA]
¡û
>W1710586403
FQXE01000003
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
561432
561522
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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