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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179165 (50 seq.)
>W1711009411
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
22051
21975
-
Met
CAT
[ENA]
¡û
>W131001140
AGWL01000002
Actinomycetota
Actinobaculum massiliense ACS-171-V-Col2 [AGWL]
145671
145595
-
Met
CAT
[ENA]
¡û
>W131046706
AMSP01000001
Actinomycetota
Brevibacterium casei S18 [AMSP]
443339
443263
-
Met
CAT
[ENA]
¡û
>W131227714
AUFJ01000010
Actinomycetota
Brevibacterium album DSM 18261 [AUFJ]
490369
490293
-
Met
CAT
[ENA]
¡û
>C171057879
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
1847830
1847754
-
Met
CAT
-
¡û
>w005563
AAGP01000024
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
1102
1178
+
Met
CAT
[ENA]
¡û
>W141241608
CAHK01000052
Actinomycetota
Brevibacterium senegalense JC43 [CAHK]
6278
6202
-
Met
CAT
[ENA]
¡û
>WENV170175973
CEOS01024379
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
380
304
-
Met
CAT
[ENA]
¢þ
>WENV170688283
LFRM01237616
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
171
245
+
Met
CAT
[ENA]
¢þ
>C181172307
CP029033
Actinomycetota
Actinobaculum sp. 313 [CP029033]
2086024
2085950
-
Met
CAT
-
¡û
>C191031882
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
1983245
1983171
-
Met
CAT
-
¡û
>C191031930
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1858820
1858746
-
Met
CAT
-
¡û
>C191031978
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
1769723
1769649
-
Met
CAT
-
¡û
>C191032025
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
1802942
1802868
-
Met
CAT
-
¡û
>C191032073
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
1938718
1938644
-
Met
CAT
-
¡û
>C191124724
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
2149313
2149239
-
Met
CAT
-
¡û
>C191124725
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
2148809
2148735
-
Met
CAT
-
¡û
>C191174132
CP040020
Actinomycetota
Brevibacterium sp. CS2 [CP040020]
2072972
2073048
+
Met
CAT
-
¡û
>W1910181651
BJME01000020
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
87547
87473
-
Met
CAT
[ENA]
¡û
>W1910331229
FSLI01000040
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
61257
61333
+
Met
CAT
[ENA]
¡û
>W1910498628
FXWZ01000002
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
801360
801286
-
Met
CAT
[ENA]
¡û
>W1910500095
FXYZ01000008
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
274
348
+
Met
CAT
[ENA]
¡û
>W1910500190
FXZB01000012
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
302
228
-
Met
CAT
[ENA]
¡û
>W1910500228
FXZC01000002
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
695280
695356
+
Met
CAT
[ENA]
¡û
>W1910500295
FXZD01000007
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
148087
148013
-
Met
CAT
[ENA]
¡û
>W1910500340
FXZE01000015
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
66234
66310
+
Met
CAT
[ENA]
¡û
>W1910500410
FXZG01000003
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
129859
129933
+
Met
CAT
[ENA]
¡û
>W1910500518
FXZI01000004
Actinomycetota
Brevibacterium aurantiacum [FXZI]
80558
80632
+
Met
CAT
[ENA]
¡û
>W1910871222
NCWY01000005
Actinomycetota
Brevibacterium casei OG2 [NCWY]
91727
91651
-
Met
CAT
[ENA]
¡û
>W1911203141
NRGO01000013
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
65595
65669
+
Met
CAT
[ENA]
¡û
>W1911203197
NRGP01000013
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
167
93
-
Met
CAT
[ENA]
¡û
>W1911203215
NRGQ01000003
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
174
248
+
Met
CAT
[ENA]
¡û
>W1911203617
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3656107
3656033
-
Met
CAT
[ENA]
¡û
>W1911203823
NRHA01000016
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
146875
146801
-
Met
CAT
[ENA]
¡û
>W1911203833
NRHB01000001
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
233085
233159
+
Met
CAT
[ENA]
¡û
>W1911696909
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
606914
606990
+
Met
CAT
[ENA]
¡û
>W1810057049
PDHL01000038
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
65547
65471
-
Met
CAT
[ENA]
¡û
>W1810756554
QPGC01000034
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
152454
152528
+
Met
CAT
[ENA]
¡û
>W1810756584
QPGD01000006
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
137544
137618
+
Met
CAT
[ENA]
¡û
>W1810756640
QPGE01000006
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
329582
329508
-
Met
CAT
[ENA]
¡û
>W1610041862
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
8843
8917
+
Met
CAT
[ENA]
¡û
>W1610041863
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
9347
9423
+
Met
CAT
[ENA]
¡û
>W1610050898
BBGH01000475
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
738
662
-
Met
CAT
[ENA]
¡û
>W1610095255
CYUL01000005
Actinomycetota
Actinobaculum massiliense [CYUL]
513727
513803
+
Met
CAT
[ENA]
¡û
>W1610857931
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
22051
21975
-
Met
CAT
[ENA]
¡û
>W1710038956
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
8843
8917
+
Met
CAT
[ENA]
¡û
>W1710038957
BAXF01000051
Actinomycetota
Arthrobacter sp. JCM 19049 [BAXF]
9347
9423
+
Met
CAT
[ENA]
¡û
>W1710047297
BBGH01000475
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
738
662
-
Met
CAT
[ENA]
¡û
>W1710098050
CYUL01000005
Actinomycetota
Actinobaculum massiliense [CYUL]
513727
513803
+
Met
CAT
[ENA]
¡û
>W1710537565
FNTX01000001
Actinomycetota
Ruania alba album [FNTX]
539055
539131
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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