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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179242 (84 seq.)
>W1710777583
LJBS01000008
Bacillota
Pediococcus acidilactici [LJBS]
11221
11294
+
Arg
TCT
[ENA]
¡û
>W1710915784
LNUM01000026
Bacillota
Pediococcus acidilactici [LNUM]
3572
3499
-
Arg
TCT
[ENA]
¡û
>W1711005568
LQNQ01000004
Bacillota
Pediococcus acidilactici [LQNQ]
77349
77422
+
Arg
TCT
[ENA]
¡û
>W1711005621
LQNR01000015
Bacillota
Pediococcus acidilactici [LQNR]
4065
4138
+
Arg
TCT
[ENA]
¡û
>W1711025260
LRBW01000005
Bacillota
Pediococcus acidilactici [LRBW]
77339
77412
+
Arg
TCT
[ENA]
¡û
>W1711258431
LYUJ01000021
Bacillota
Pediococcus acidilactici [LYUJ]
23674
23601
-
Arg
TCT
[ENA]
¡û
>W1711585791
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
793139
793066
-
Arg
TCT
[ENA]
¡û
>W1711683637
MRYO01000003
Bacillota
Ligilactobacillus ruminis [MRYO]
87123
87048
-
Arg
TCT
[ENA]
¡û
>W1711683690
MRYP01000001
Bacillota
Ligilactobacillus ruminis [MRYP]
105368
105293
-
Arg
TCT
[ENA]
¡û
>W1711683753
MRYQ01000003
Bacillota
Ligilactobacillus ruminis [MRYQ]
112818
112743
-
Arg
TCT
[ENA]
¡û
>C171036770
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
209017
209090
+
Arg
TCT
-
¡û
>C171083280
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
917583
917656
+
Arg
TCT
-
¡û
>C171119586
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
812558
812631
+
Arg
TCT
-
¡û
>C171119643
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
812502
812575
+
Arg
TCT
-
¡û
>C171120446
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
812566
812639
+
Arg
TCT
-
¡û
>W131146229
AQGT01000002
Bacillota
Pediococcus acidilactici D3 [AQGT]
250992
251065
+
Arg
TCT
[ENA]
¡û
>W131239175
BANK01000005
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
25131
25058
-
Arg
TCT
[ENA]
¡û
>WENV180290430
OBIU01020781
[OBIU] human gut metagenome; human gut
893
818
-
Arg
TCT
[ENA]
¢þ
>WENV180319180
OBKN01000144
[OBKN] human gut metagenome; human gut
36736
36661
-
Arg
TCT
[ENA]
¢þ
>WENV180334989
OBLF01120989
[OBLF] metagenome; feces
233
160
-
Arg
TCT
[ENA]
¢þ
>WENV180829075
ODKA01052484
[ODKA] human metagenome; G_DNA_Stool
143
218
+
Arg
TCT
[ENA]
¢þ
>WENV181329810
OFLY01000206
[OFLY] human gut metagenome; human gut
14278
14353
+
Arg
TCT
[ENA]
¢þ
>WENV181333508
OFMB01000266
[OFMB] human gut metagenome; human gut
9284
9209
-
Arg
TCT
[ENA]
¢þ
>WENV181355029
OFMT01000277
[OFMT] human gut metagenome; human gut
35807
35732
-
Arg
TCT
[ENA]
¢þ
>WENV181452092
OGDY01078080
[OGDY] metagenome; Human gut stool
316
241
-
Arg
TCT
[ENA]
¢þ
>WENV181684427
OGOV01009080
[OGOV] human gut metagenome; faeces
730
805
+
Arg
TCT
[ENA]
¢þ
>WENV181714040
OGPR01000375
[OGPR] human gut metagenome; faeces
36870
36795
-
Arg
TCT
[ENA]
¢þ
>WENV181736549
OGQH01000701
[OGQH] human gut metagenome; faeces
35767
35692
-
Arg
TCT
[ENA]
¢þ
>WENV181785952
OGRN01000359
[OGRN] human gut metagenome; faeces
38363
38438
+
Arg
TCT
[ENA]
¢þ
>WENV181973467
OHAA01053051
[OHAA] human gut metagenome; faeces
535
610
+
Arg
TCT
[ENA]
¢þ
>WENV182274087
OHUJ01033424
[OHUJ] human gut metagenome; feces
121
46
-
Arg
TCT
[ENA]
¢þ
>WENV182295888
OHWG01000067
[OHWG] human gut metagenome; feces
33498
33423
-
Arg
TCT
[ENA]
¢þ
>WENV182360019
OICB01000063
[OICB] human gut metagenome; feces
32949
33024
+
Arg
TCT
[ENA]
¢þ
>WENV182362456
OICD01033822
[OICD] human gut metagenome; feces
392
317
-
Arg
TCT
[ENA]
¢þ
>WENV182370329
OICT01000056
[OICT] human gut metagenome; feces
37957
38032
+
Arg
TCT
[ENA]
¢þ
>WENV182375632
OIDD01000055
[OIDD] human gut metagenome; feces
41134
41209
+
Arg
TCT
[ENA]
¢þ
>W141280166
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
283094
283021
-
Arg
TCT
[ENA]
¡û
>WENV182929568
OKUQ01002134
[OKUQ] human gut metagenome; feces
5443
5368
-
Arg
TCT
[ENA]
¢þ
>WENV182943214
OKVH01042167
[OKVH] human gut metagenome; human gut
239
314
+
Arg
TCT
[ENA]
¢þ
>WENV183553332
OOBK01002438
[OOBK] human gut metagenome; human gut
6296
6371
+
Arg
TCT
[ENA]
¢þ
>WENV183762390
PPYE01275679
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
11544
11471
-
Arg
TCT
[ENA]
¢þ
>WENV183792283
PPYF01458205
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2557
2630
+
Arg
TCT
[ENA]
¢þ
>C191035344
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
832415
832488
+
Arg
TCT
-
¡û
>C191106227
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
1235115
1235042
-
Arg
TCT
-
¡û
>C191135583
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
768652
768725
+
Arg
TCT
-
¡û
>C191135640
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
885294
885367
+
Arg
TCT
-
¡û
>C191137802
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
811640
811713
+
Arg
TCT
-
¡û
>W09123101
ACGS01000019
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
1892
1967
+
Arg
TCT
[ENA]
¡û
>W1910181656
BJMF01000002
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
185181
185254
+
Arg
TCT
[ENA]
¡û
>W1910373945
FUHV01000010
Bacillota
Pediococcus acidilactici S7 [FUHV]
481925
481852
-
Arg
TCT
[ENA]
¡û
>W1911696852
QNGC01000006
Bacillota
Pediococcus acidilactici GS1 [QNGC]
100551
100624
+
Arg
TCT
[ENA]
¡û
>W1911798482
QYRQ01000022
Bacillota
Pediococcus acidilactici WT [QYRQ]
99859
99786
-
Arg
TCT
[ENA]
¡û
>W1810049823
PCYQ01000001
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
331446
331373
-
Arg
TCT
[ENA]
¡û
>W1810834758
QSQR01000016
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
8568
8493
-
Arg
TCT
[ENA]
¡û
>W10105134
ACXB01000008
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
86231
86158
-
Arg
TCT
[ENA]
¡û
>W10127345
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
210580
210653
+
Arg
TCT
[ENA]
¡û
>W11107454
ACXB01000008
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
86231
86158
-
Arg
TCT
[ENA]
¡û
>W1511007751
JHAB01000061
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
3377
3452
+
Arg
TCT
[ENA]
¡û
>W1511008100
JHAJ01000113
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
55117
55192
+
Arg
TCT
[ENA]
¡û
>W11134833
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
210580
210653
+
Arg
TCT
[ENA]
¡û
>W11168663
AFOJ01000002
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
74501
74426
-
Arg
TCT
[ENA]
¡û
>W11176982
AFYE01000071
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
8978
8903
-
Arg
TCT
[ENA]
¡û
>C121004235
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
1083383
1083458
+
Arg
TCT
[Ensembl]
¡û
>W1610029440
AWYA01000097
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
1847
1922
+
Arg
TCT
[ENA]
¡û
>W1610029455
AWYB01000158
Bacillota
Ligilactobacillus ruminis S23 [AWYB]
667
742
+
Arg
TCT
[ENA]
¡û
>W1610030968
AYYL01000001
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
44997
45072
+
Arg
TCT
[ENA]
¡û
>W1610073238
BCVU01000001
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
45107
45182
+
Arg
TCT
[ENA]
¡û
>W121011487
AGKB01000007
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
135876
135949
+
Arg
TCT
[ENA]
¡û
>W1610527724
JQAQ01000001
Bacillota
Pediococcus acidilactici [JQAQ]
161152
161225
+
Arg
TCT
[ENA]
¡û
>W1610529453
JQCC01000001
Bacillota
Pediococcus acidilactici [JQCC]
368150
368077
-
Arg
TCT
[ENA]
¡û
>W1610641769
LJBS01000008
Bacillota
Pediococcus acidilactici [LJBS]
11221
11294
+
Arg
TCT
[ENA]
¡û
>W1610774023
LNUM01000026
Bacillota
Pediococcus acidilactici [LNUM]
3572
3499
-
Arg
TCT
[ENA]
¡û
>W1610856218
LQNQ01000004
Bacillota
Pediococcus acidilactici [LQNQ]
77349
77422
+
Arg
TCT
[ENA]
¡û
>W1610856271
LQNR01000015
Bacillota
Pediococcus acidilactici [LQNR]
4065
4138
+
Arg
TCT
[ENA]
¡û
>W1610873372
LRBW01000005
Bacillota
Pediococcus acidilactici [LRBW]
77339
77412
+
Arg
TCT
[ENA]
¡û
>W1611020903
LYUJ01000021
Bacillota
Pediococcus acidilactici [LYUJ]
23674
23601
-
Arg
TCT
[ENA]
¡û
>W1710026810
AWYA01000097
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
1847
1922
+
Arg
TCT
[ENA]
¡û
>W1710026825
AWYB01000158
Bacillota
Ligilactobacillus ruminis S23 [AWYB]
667
742
+
Arg
TCT
[ENA]
¡û
>W1710027920
AYYL01000001
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
44997
45072
+
Arg
TCT
[ENA]
¡û
>W1710070356
BCVU01000001
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
45107
45182
+
Arg
TCT
[ENA]
¡û
>W1710546274
FOCC01000002
Bacillota
Ligilactobacillus ruminis [FOCC]
32509
32584
+
Arg
TCT
[ENA]
¡û
>W1710562947
FOPI01000003
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
105202
105127
-
Arg
TCT
[ENA]
¡û
>W1710629355
JQAQ01000001
Bacillota
Pediococcus acidilactici [JQAQ]
161152
161225
+
Arg
TCT
[ENA]
¡û
>W1710631043
JQCC01000001
Bacillota
Pediococcus acidilactici [JQCC]
368150
368077
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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