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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179243 (112 seq.)
>W1710777582
LJBS01000007
Bacillota
Pediococcus acidilactici [LJBS]
74672
74597
-
Pro
CGG
[ENA]
¡û
>W1710881908
LMTJ01000016
Bacillota
Bacillus sp. FJAT-29814 [LMTJ]
75855
75782
-
Pro
CGG
[ENA]
¡û
>W1710915777
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
8970
8895
-
Pro
CGG
[ENA]
¡û
>W1711005578
LQNQ01000010
Bacillota
Pediococcus acidilactici [LQNQ]
60332
60257
-
Pro
CGG
[ENA]
¡û
>W1711005640
LQNR01000048
Bacillota
Pediococcus acidilactici [LQNR]
35959
35884
-
Pro
CGG
[ENA]
¡û
>W1711025281
LRBW01000017
Bacillota
Pediococcus acidilactici [LRBW]
60331
60256
-
Pro
CGG
[ENA]
¡û
>W131146243
AQGT01000005
Bacillota
Pediococcus acidilactici D3 [AQGT]
32152
32227
+
Pro
CGG
[ENA]
¡û
>W1711130311
LUUQ01000002
Bacillota
Neobacillus mesonae [LUUQ]
330228
330154
-
Pro
CGG
[ENA]
¡û
>W1711258426
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
91262
91337
+
Pro
CGG
[ENA]
¡û
>W131226318
AUEH01000036
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AUEH]
33075
33000
-
Pro
CGG
[ENA]
¡û
>W1711352487
MDDF01000131
Bacillota
Pediococcus acidilactici [MDDF]
35389
35314
-
Pro
CGG
[ENA]
¡û
>W131239184
BANK01000011
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
10133
10058
-
Pro
CGG
[ENA]
¡û
>W1711585755
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
110640
110715
+
Pro
CGG
[ENA]
¡û
>W1711683649
MRYO01000009
Bacillota
Ligilactobacillus ruminis [MRYO]
985
1058
+
Pro
CGG
[ENA]
¡û
>W1711683746
MRYP01000035
Bacillota
Ligilactobacillus ruminis [MRYP]
16878
16805
-
Pro
CGG
[ENA]
¡û
>W1711683798
MRYQ01000028
Bacillota
Ligilactobacillus ruminis [MRYQ]
16923
16850
-
Pro
CGG
[ENA]
¡û
>C171036815
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
937539
937464
-
Pro
CGG
-
¡û
>C171083297
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1644111
1644036
-
Pro
CGG
-
¡û
>C171119604
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1571813
1571738
-
Pro
CGG
-
¡û
>C171119661
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
1571693
1571618
-
Pro
CGG
-
¡û
>C171120464
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1571823
1571748
-
Pro
CGG
-
¡û
>WENV180289875
OBIU01000353
[OBIU] human gut metagenome; human gut
20895
20822
-
Pro
CGG
[ENA]
¢þ
>WENV180319841
OBKN01013025
[OBKN] human gut metagenome; human gut
972
1045
+
Pro
CGG
[ENA]
¢þ
>WENV180334581
OBLF01021477
[OBLF] metagenome; feces
14
89
+
Pro
CGG
[ENA]
¢þ
>WENV180401923
OBRN01012911
[OBRN] human gut metagenome; ENVO:feces
678
605
-
Pro
CGG
[ENA]
¢þ
>WENV180828634
ODKA01016023
[ODKA] human metagenome; G_DNA_Stool
829
756
-
Pro
CGG
[ENA]
¢þ
>W141092457
AVAA01000290
Bacillota
Schleiferilactobacillus shenzhenensis LY-73 [AVAA]
4
78
+
Pro
CGG
[ENA]
¡û
>WENV181329981
OFLY01000837
[OFLY] human gut metagenome; human gut
411
484
+
Pro
CGG
[ENA]
¢þ
>WENV181333449
OFMB01000133
[OFMB] human gut metagenome; human gut
55756
55683
-
Pro
CGG
[ENA]
¢þ
>WENV181355239
OFMT01000979
[OFMT] human gut metagenome; human gut
826
899
+
Pro
CGG
[ENA]
¢þ
>WENV181398097
OFSD01024375
[OFSD] human gut metagenome; human gut
1739
1666
-
Pro
CGG
[ENA]
¢þ
>WENV181473401
OGFB01003106
[OGFB] metagenome; Human gut stool
94
167
+
Pro
CGG
[ENA]
¢þ
>WENV181684723
OGOV01022044
[OGOV] human gut metagenome; faeces
330
403
+
Pro
CGG
[ENA]
¢þ
>WENV181713958
OGPR01000267
[OGPR] human gut metagenome; faeces
61198
61125
-
Pro
CGG
[ENA]
¢þ
>WENV181736382
OGQH01000328
[OGQH] human gut metagenome; faeces
2026
2099
+
Pro
CGG
[ENA]
¢þ
>WENV181786252
OGRN01001198
[OGRN] human gut metagenome; faeces
855
928
+
Pro
CGG
[ENA]
¢þ
>WENV181973198
OHAA01016778
[OHAA] human gut metagenome; faeces
213
286
+
Pro
CGG
[ENA]
¢þ
>WENV182295883
OHWG01000055
[OHWG] human gut metagenome; feces
975
1048
+
Pro
CGG
[ENA]
¢þ
>WENV182360007
OICB01000045
[OICB] human gut metagenome; feces
74878
74805
-
Pro
CGG
[ENA]
¢þ
>WENV182361854
OICD01001577
[OICD] human gut metagenome; feces
218
291
+
Pro
CGG
[ENA]
¢þ
>WENV182363061
OICE01028111
[OICE] human gut metagenome; feces
306
379
+
Pro
CGG
[ENA]
¢þ
>WENV182370324
OICT01000043
[OICT] human gut metagenome; feces
74878
74805
-
Pro
CGG
[ENA]
¢þ
>WENV182375631
OIDD01000054
[OIDD] human gut metagenome; feces
75148
75075
-
Pro
CGG
[ENA]
¢þ
>W141237650
BBJM01000018
Bacillota
Secundilactobacillus oryzae [BBJM]
30863
30790
-
Pro
CGG
[ENA]
¡û
>W141260523
CCAD010000066
Bacillota
Neobacillus dielmonensis FF4 [CCAD]
436
509
+
Pro
CGG
[ENA]
¡û
>W141265253
CCFE01000021
Bacillota
Bacillus rubiinfantis MT2 [CCFE]
298754
298828
+
Pro
CGG
[ENA]
¡û
>W141280127
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1468434
1468509
+
Pro
CGG
[ENA]
¡û
>WENV182943034
OKVH01018319
[OKVH] human gut metagenome; human gut
924
851
-
Pro
CGG
[ENA]
¢þ
>WENV183238405
OLQY01042400
[OLQY] human gut metagenome; faeces
559
484
-
Pro
CGG
[ENA]
¢þ
>WENV183491469
OMGG01013750
[OMGG] human gut metagenome; human gut
36
111
+
Pro
CGG
[ENA]
¢þ
>WENV183553238
OOBK01001432
[OOBK] human gut metagenome; human gut
9330
9403
+
Pro
CGG
[ENA]
¢þ
>WENV183762345
PPYE01275513
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2481
2406
-
Pro
CGG
[ENA]
¢þ
>WENV183767230
PPYE01362986
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
53
126
+
Pro
CGG
[ENA]
¢þ
>WENV183789087
PPYF01376682
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1296
1221
-
Pro
CGG
[ENA]
¢þ
>WENV183792275
PPYF01458117
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4932
5007
+
Pro
CGG
[ENA]
¢þ
>C191020752
CP022572
Bacillota
Neobacillus mesonae H20-5 [CP022572]
3590649
3590575
-
Pro
CGG
-
¡û
>C191035362
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1508711
1508636
-
Pro
CGG
-
¡û
>C191106188
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
557448
557523
+
Pro
CGG
-
¡û
>C191135600
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1414899
1414824
-
Pro
CGG
-
¡û
>C191135658
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1533966
1533891
-
Pro
CGG
-
¡û
>C191137790
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
439666
439741
+
Pro
CGG
-
¡û
>W09123125
ACGS01000073
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
724
797
+
Pro
CGG
[ENA]
¡û
>W1910177364
BJDR01000031
Bacillota
Enterococcus nangangensis Feb-94 [BJDR]
14750
14823
+
Pro
CGG
[ENA]
¡û
>W1910181671
BJMF01000003
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
121507
121432
-
Pro
CGG
[ENA]
¡û
>W1910373932
FUHV01000006
Bacillota
Pediococcus acidilactici S7 [FUHV]
229882
229807
-
Pro
CGG
[ENA]
¡û
>W1911632108
PUFO01000044
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
7268
7341
+
Pro
CGG
[ENA]
¡û
>W1911696877
QNGC01000024
Bacillota
Pediococcus acidilactici GS1 [QNGC]
83617
83542
-
Pro
CGG
[ENA]
¡û
>W1911798505
QYRQ01000037
Bacillota
Pediococcus acidilactici WT [QYRQ]
83645
83570
-
Pro
CGG
[ENA]
¡û
>W1810049835
PCYQ01000002
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
90695
90770
+
Pro
CGG
[ENA]
¡û
>W1810531606
QCXQ01000002
Bacillota
Levilactobacillus bambusae BS-W1 [QCXQ]
120224
120149
-
Pro
CGG
[ENA]
¡û
>W1810834740
QSQR01000007
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
776
849
+
Pro
CGG
[ENA]
¡û
>W10105151
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
224448
224373
-
Pro
CGG
[ENA]
¡û
>W1510071503
CDGP01000071
Bacillota
Bhargavaea cecembensis B-C2 [CDGP]
756
680
-
Pro
CGG
[ENA]
¡û
>W10127372
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
222553
222478
-
Pro
CGG
[ENA]
¡û
>W11107471
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
224448
224373
-
Pro
CGG
[ENA]
¡û
>W1511007749
JHAB01000046
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
33904
33831
-
Pro
CGG
[ENA]
¡û
>W1511008108
JHAJ01000118
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
779
852
+
Pro
CGG
[ENA]
¡û
>W11134860
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
222553
222478
-
Pro
CGG
[ENA]
¡û
>W11168677
AFOJ01000008
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
113955
113882
-
Pro
CGG
[ENA]
¡û
>W11177003
AFYE01000093
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
723
796
+
Pro
CGG
[ENA]
¡û
>W11184768
BACN01000031
Bacillota
Secundilactobacillus malefermentans KCTC 3548 [BACN]
6035
6108
+
Pro
CGG
[ENA]
¡û
>C121004209
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
280284
280357
+
Pro
CGG
[Ensembl]
¡û
>W121011515
AGKB01000010
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
225106
225031
-
Pro
CGG
[ENA]
¡û
>W1610029437
AWYA01000066
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
24441
24368
-
Pro
CGG
[ENA]
¡û
>W1610029452
AWYB01000122
Bacillota
Ligilactobacillus ruminis S23 [AWYB]
3577
3504
-
Pro
CGG
[ENA]
¡û
>W1610030990
AYYL01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
754
827
+
Pro
CGG
[ENA]
¡û
>W1610034906
AZEC01000004
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
172
248
+
Pro
CGG
[ENA]
¡û
>W1610037244
AZFW01000161
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
32802
32727
-
Pro
CGG
[ENA]
¡û
>W1610037876
AZGJ01000001
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
6057
6130
+
Pro
CGG
[ENA]
¡û
>W1610072439
BCUZ01000216
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
1996
1920
-
Pro
CGG
[ENA]
¡û
>W1610073251
BCVU01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
16749
16676
-
Pro
CGG
[ENA]
¡û
>W1610527746
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
91027
91102
+
Pro
CGG
[ENA]
¡û
>W1610529468
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
90879
90954
+
Pro
CGG
[ENA]
¡û
>W1610641768
LJBS01000007
Bacillota
Pediococcus acidilactici [LJBS]
74672
74597
-
Pro
CGG
[ENA]
¡û
>W1610743943
LMTJ01000016
Bacillota
Bacillus sp. FJAT-29814 [LMTJ]
75855
75782
-
Pro
CGG
[ENA]
¡û
>W1610774016
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
8970
8895
-
Pro
CGG
[ENA]
¡û
>W1610856228
LQNQ01000010
Bacillota
Pediococcus acidilactici [LQNQ]
60332
60257
-
Pro
CGG
[ENA]
¡û
>W1610856290
LQNR01000048
Bacillota
Pediococcus acidilactici [LQNR]
35959
35884
-
Pro
CGG
[ENA]
¡û
>W1610873393
LRBW01000017
Bacillota
Pediococcus acidilactici [LRBW]
60331
60256
-
Pro
CGG
[ENA]
¡û
>W1610941384
LUUQ01000002
Bacillota
Neobacillus mesonae [LUUQ]
330228
330154
-
Pro
CGG
[ENA]
¡û
>W1611020898
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
91262
91337
+
Pro
CGG
[ENA]
¡û
>W1710026807
AWYA01000066
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
24441
24368
-
Pro
CGG
[ENA]
¡û
>W1710026822
AWYB01000122
Bacillota
Ligilactobacillus ruminis S23 [AWYB]
3577
3504
-
Pro
CGG
[ENA]
¡û
>W1710027942
AYYL01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
754
827
+
Pro
CGG
[ENA]
¡û
>W1710032033
AZEC01000004
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
172
248
+
Pro
CGG
[ENA]
¡û
>W1710034283
AZFW01000161
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
32802
32727
-
Pro
CGG
[ENA]
¡û
>W1710034915
AZGJ01000001
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
6057
6130
+
Pro
CGG
[ENA]
¡û
>W1710069641
BCUZ01000216
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
1996
1920
-
Pro
CGG
[ENA]
¡û
>W1710070369
BCVU01000035
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
16749
16676
-
Pro
CGG
[ENA]
¡û
>W1710563004
FOPI01000036
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
1211
1284
+
Pro
CGG
[ENA]
¡û
>W1710629377
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
91027
91102
+
Pro
CGG
[ENA]
¡û
>W1710631058
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
90879
90954
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK