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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179252 (44 seq.)
>W1712041324
NFKZ01000003
Bacillota
Lactobacillus gallinarum [NFKZ]
135069
134994
-
Pro
CGG
[ENA]
¡û
>W1712042236
NFLP01000004
Bacillota
Lactobacillus gallinarum [NFLP]
89550
89475
-
Pro
CGG
[ENA]
¡û
>W1712042404
NFLS01000004
Bacillota
Lactobacillus gallinarum [NFLS]
240
315
+
Pro
CGG
[ENA]
¡û
>W1712042795
NFLZ01000004
Bacillota
Lactobacillus gallinarum [NFLZ]
230
305
+
Pro
CGG
[ENA]
¡û
>WENV180339238
OBLI01003028
[OBLI] pig gut metagenome; faeces
64
139
+
Pro
CGG
[ENA]
¢þ
>W141227498
BALB01000002
Bacillota
Lactobacillus gallinarum JCM 2011 [BALB]
126979
126904
-
Pro
CGG
[ENA]
¡û
>W141228111
BALR01000003
Bacillota
Lactobacillus acidophilus JCM 1132 [BALR]
68208
68135
-
Pro
CGG
[ENA]
¡û
>W141228251
BALU01000004
Bacillota
Lactobacillus kitasatonis JCM 1039 [BALU]
67758
67683
-
Pro
CGG
[ENA]
¡û
>W141228439
BALY01000003
Bacillota
Lactobacillus hamsteri JCM 6256 [BALY]
95041
94966
-
Pro
CGG
[ENA]
¡û
>WENV183149997
OLOP01000006
[OLOP] human gut metagenome; faeces
67014
67089
+
Pro
CGG
[ENA]
¢þ
>WENV183182217
OLPK01000067
[OLPK] human gut metagenome; faeces
86
161
+
Pro
CGG
[ENA]
¢þ
>WENV183237200
OLQY01000102
[OLQY] human gut metagenome; faeces
39952
39877
-
Pro
CGG
[ENA]
¢þ
>WENV183263409
OLRR01000219
[OLRR] human gut metagenome; faeces
35212
35137
-
Pro
CGG
[ENA]
¢þ
>WENV183606008
OODN01000246
[OODN] human gut metagenome; human gut
112
187
+
Pro
CGG
[ENA]
¢þ
>WENV183771787
PPYF01000156
[PPYF] human gut metagenome; stool from patient with Crohn's disease
16433
16506
+
Pro
CGG
[ENA]
¢þ
>WENV183772522
PPYF01017198
[PPYF] human gut metagenome; stool from patient with Crohn's disease
26475
26548
+
Pro
CGG
[ENA]
¢þ
>C181012348
CP012389
Bacillota
Lactobacillus amylovorus JBD401 [CP012389]
219454
219529
+
Pro
CGG
-
¡û
>C181027667
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
836399
836324
-
Pro
CGG
-
¡û
>W1911569371
PCYT01000001
Bacillota
Lactobacillus sp. UMNPBX17 [PCYT]
268
343
+
Pro
CGG
[ENA]
¡û
>W1911569546
PCYW01000005
Bacillota
Lactobacillus sp. UMNPBX14 [PCYW]
53881
53806
-
Pro
CGG
[ENA]
¡û
>W1911569944
PCZD01000005
Bacillota
Lactobacillus sp. UMNPBX6 [PCZD]
53881
53806
-
Pro
CGG
[ENA]
¡û
>W1911570101
PCZF01000059
Bacillota
Lactobacillus sp. UMNPBX4 [PCZF]
259
184
-
Pro
CGG
[ENA]
¡û
>W1911597884
PNRB01000006
Bacillota
Lactobacillus amylovorus PMRA1 [PNRB]
24853
24778
-
Pro
CGG
[ENA]
¡û
>W1810473849
QAHT01000002
Bacillota
Lactobacillus acidophilus DS1_1A [QAHT]
78209
78136
-
Pro
CGG
[ENA]
¡û
>W1810815301
QSAX01000001
Bacillota
Lactobacillus amylovorus AF08-3 [QSAX]
51881
51806
-
Pro
CGG
[ENA]
¡û
>C151068713
CP010432
Bacillota
Lactobacillus acidophilus FSI4 [CP010432]
275959
276032
+
Pro
CGG
[Ensembl]
¡û
>W1510072875
CDLD01000004
Bacillota
Lactobacillus sp. OTU4228 sp. [CDLD]
71383
71458
+
Pro
CGG
[ENA]
¡û
>C11111911
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
288157
288232
+
Pro
CGG
[Ensembl]
¡û
>C11112006
CP002609
Bacillota
Lactobacillus amylovorus GRL1118 [CP002609]
280285
280360
+
Pro
CGG
[Ensembl]
¡û
>C11112065
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
303679
303754
+
Pro
CGG
[Ensembl]
¡û
>W1511580671
LARO01000023
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
4757
4682
-
Pro
CGG
[ENA]
¡û
>W1610032813
AZCM01000009
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
32708
32633
-
Pro
CGG
[ENA]
¡û
>W1610035356
AZEL01000011
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
87
162
+
Pro
CGG
[ENA]
¡û
>W1610037104
AZFU01000022
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
67824
67749
-
Pro
CGG
[ENA]
¡û
>W1610037825
AZGI01000005
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
95103
95028
-
Pro
CGG
[ENA]
¡û
>W1610073125
BCVR01000003
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [BCVR]
69221
69148
-
Pro
CGG
[ENA]
¡û
>W1610528877
JQBQ01000007
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
14603
14678
+
Pro
CGG
[ENA]
¡û
>W1710030144
AZCM01000009
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
32708
32633
-
Pro
CGG
[ENA]
¡û
>W1710032395
AZEL01000011
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
87
162
+
Pro
CGG
[ENA]
¡û
>W1710034143
AZFU01000022
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
67824
67749
-
Pro
CGG
[ENA]
¡û
>W1710034864
AZGI01000005
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
95103
95028
-
Pro
CGG
[ENA]
¡û
>W1710070243
BCVR01000003
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [BCVR]
69221
69148
-
Pro
CGG
[ENA]
¡û
>W1710082783
BDHM01000005
Bacillota
Lactobacillus acidophilus [BDHM]
78545
78472
-
Pro
CGG
[ENA]
¡û
>W1710630467
JQBQ01000007
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
14603
14678
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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