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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179274 (56 seq.)
>W1711437900
MIPW01000006
Gammaproteobacteria
Alteromonas macleodii [MIPW]
866513
866589
+
Arg
ACG
[ENA]
¡û
>W1711437901
MIPW01000006
Gammaproteobacteria
Alteromonas macleodii [MIPW]
866643
866719
+
Arg
ACG
[ENA]
¡û
>C171016828
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
1315981
1315905
-
Arg
ACG
-
¡û
>W131223242
AUBY01000003
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
368616
368692
+
Arg
ACG
[ENA]
¡û
>W131223245
AUBY01000004
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
2
78
+
Arg
ACG
[ENA]
¡û
>W131223347
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
59243
59167
-
Arg
ACG
[ENA]
¡û
>W131223348
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
59113
59037
-
Arg
ACG
[ENA]
¡û
>W131223349
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
59001
58925
-
Arg
ACG
[ENA]
¡û
>W131223350
AUBZ01000031
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
58875
58799
-
Arg
ACG
[ENA]
¡û
>W131241532
BARX01000047
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
1
77
+
Arg
ACG
[ENA]
¡û
>W131045901
AMRX01000006
Gammaproteobacteria
Gayadomonas joobiniege G7 [AMRX]
57376
57452
+
Arg
ACG
[ENA]
¡û
>W131045902
AMRX01000006
Gammaproteobacteria
Gayadomonas joobiniege G7 [AMRX]
57475
57551
+
Arg
ACG
[ENA]
¡û
>w026300
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
3916
3838
-
Arg
ACG
[ENA]
¡û
>w026298
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4233
4155
-
Arg
ACG
[ENA]
¡û
>w026297
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4368
4290
-
Arg
ACG
[ENA]
¡û
>w026296
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4493
4415
-
Arg
ACG
[ENA]
¡û
>w026295
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4656
4583
-
Arg
ACG
[ENA]
¡û
>w026294
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4768
4690
-
Arg
ACG
[ENA]
¡û
>W141067218
ARZY01000007
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
26656
26732
+
Arg
ACG
[ENA]
¡û
>W141067219
ARZY01000007
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
26758
26834
+
Arg
ACG
[ENA]
¡û
>W141067220
ARZY01000007
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
26860
26936
+
Arg
ACG
[ENA]
¡û
>WENV170025080
BCQL01204827
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
7
83
+
Arg
ACG
[ENA]
¢þ
>WENV170025081
BCQL01204827
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
132
208
+
Arg
ACG
[ENA]
¢þ
>WENV170025083
BCQL01204827
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
358
434
+
Arg
ACG
[ENA]
¢þ
>WENV170756419
LUMO01031572
[LUMO] marine metagenome; Red Sea water column Station 22 - depth 10m
153
77
-
Arg
ACG
[ENA]
¢þ
>C181136219
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4597079
4597003
-
Arg
ACG
-
¡û
>C181136220
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
4596974
4596898
-
Arg
ACG
-
¡û
>W09103919
AALB01000025
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
1906
1830
-
Arg
ACG
[ENA]
¡û
>W09109219
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
567971
568047
+
Arg
ACG
[ENA]
¡û
>W1910178261
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
334334
334258
-
Arg
ACG
[ENA]
¡û
>W1911717917
QQTG01000031
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG07 [QQTG]
66498
66422
-
Arg
ACG
[ENA]
¡û
>W1810628310
QICH01000003
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
479636
479560
-
Arg
ACG
[ENA]
¡û
>W1810701347
QMED01000006
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
29516
29440
-
Arg
ACG
[ENA]
¡û
>W1810701348
QMED01000006
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
29412
29336
-
Arg
ACG
[ENA]
¡û
>C151074732
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
1317387
1317311
-
Arg
ACG
[Ensembl]
¡û
>C10108028
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
1529524
1529448
-
Arg
ACG
[Ensembl]
¡û
>W1511586712
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
5940
5864
-
Arg
ACG
[ENA]
¡û
>W1511586713
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
5841
5765
-
Arg
ACG
[ENA]
¡û
>C161049676
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303612
1303536
-
Arg
ACG
-
¡û
>C161049677
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303495
1303419
-
Arg
ACG
-
¡û
>C161049678
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303364
1303288
-
Arg
ACG
-
¡û
>C161049679
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303246
1303170
-
Arg
ACG
-
¡û
>C161049681
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1303020
1302944
-
Arg
ACG
-
¡û
>C161049682
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1302889
1302813
-
Arg
ACG
-
¡û
>W121070156
AJWM01000024
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
3739
3815
+
Arg
ACG
[ENA]
¡û
>W121070157
AJWM01000024
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
3843
3919
+
Arg
ACG
[ENA]
¡û
>C131007690
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3483647
3483571
-
Arg
ACG
-
¡û
>C131007691
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3483510
3483434
-
Arg
ACG
-
¡û
>W1710692498
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179199
179275
+
Arg
ACG
[ENA]
¡û
>W1710692500
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179465
179541
+
Arg
ACG
[ENA]
¡û
>W1710692502
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179705
179781
+
Arg
ACG
[ENA]
¡û
>W1710692504
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
180004
180080
+
Arg
ACG
[ENA]
¡û
>W1710706701
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
303136
303060
-
Arg
ACG
[ENA]
¡û
>W1710706703
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
302870
302794
-
Arg
ACG
[ENA]
¡û
>W1710706705
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
302630
302554
-
Arg
ACG
[ENA]
¡û
>W1710706707
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
302331
302255
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK