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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179289 (10 seq.)
>A171000278
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
786143
786067
-
Pro
TGG
-
¡û
>A171001541
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1633406
1633482
+
Pro
TGG
-
¡û
>A171002489
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
107795
107871
+
Pro
TGG
-
¡û
>At1077
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1517796
1517720
-
Pro
TGG
[Ensembl]
¡û
>At1090
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1072031
1072107
+
Pro
TGG
[Ensembl]
¡û
>At1121
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
112998
113074
+
Pro
TGG
[Ensembl]
¡û
>W1610000321
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
308828
308752
-
Pro
TGG
[ENA]
¡û
>W1610000471
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
700908
700832
-
Pro
TGG
[ENA]
¡û
>W1610000572
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1631493
1631417
-
Pro
TGG
[ENA]
¡û
>W1610000617
ABHB01000002
Euryarchaeota
Methanococcus voltae A3 [ABHB]
81609
81533
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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